PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H02505.1.p | ||||||||
Common Name | EUGRSUZ_H02505, LOC104414145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 22996.3 Da PI: 9.0639 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.4 | 2.4e-15 | 13 | 49 | 5 | 41 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 n + r + + kR++g++KKA E SvLC+++ +v++f Eucgr.H02505.1.p 13 NARARRIAYEKRKKGLMKKAREFSVLCGVDTCVVVFP 49 77889******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-11 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-16 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.862 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.67E-17 | 2 | 88 | No hit | No description |
PRINTS | PR00404 | 2.0E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-15 | 13 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRGKTPHGL VPNARARRIA YEKRKKGLMK KAREFSVLCG VDTCVVVFPE AAAAGGDRPT 60 TPEVWPPDSG EARRIIERYR SAGRKEKKLD LGGKGELLKD FSKSQLRSLL SILGDRVDLA 120 KRKLAAMKAE KRVAMAGVIL GPCNEEGPSV DAVPQETPHQ ACAASTPEWA AGAQANNAPC 180 SYSSVDGCRD TLAMEEDDST FFRTFLTETI VF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 25 | RARRIAYEKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H02505.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010023474.1 | 1e-155 | PREDICTED: MADS-box transcription factor 4 | ||||
TrEMBL | A0A059B0V5 | 1e-154 | A0A059B0V5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010023474.1 | 1e-155 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-17 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H02505.1.p |
Entrez Gene | 104414145 |