PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02396.1.p
Common NameEUGRSUZ_H02396
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 308aa    MW: 34112.7 Da    PI: 7.339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75e-14119165455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++N++f  L +++P +     +Kl+Ka++L  +++Y+k+L+
  Eucgr.H02396.1.p 119 EHVIAERKRREKLNQRFIALSSIIPDL-----TKLDKASVLGDTIKYLKQLE 165
                       699***********************9.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17119176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16120180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-13120169No hitNo description
SMARTSM003537.1E-15121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
VTENPAFVDQ YQMNPFGYSL TESGFNQFSS FSSASTYSPN QIQNVGHLCD VPIATECKNP  60
QTKPSPPSNS HIISFQNSDL SPDISQQYSG TYELQDGGGM KMKRSCGVTF SRTTLHGQEH  120
VIAERKRREK LNQRFIALSS IIPDLTKLDK ASVLGDTIKY LKQLEERVKI LEEEMTTRTV  180
ESATFAKNPS LQRGDGVISF SSDEKSYDPL IGQQLPDVEA RVSGKNVLIK VQCVKREGCI  240
KEVMKQIEVM NLTTLNISVL AFGSSLLDVT IVAQIENENC PTIQEIVKKL RNALTTFIRS  300
SSRQSAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13120174963Transcription factor MYC2
5gnj_B4e-13120174963Transcription factor MYC2
5gnj_E4e-13120174963Transcription factor MYC2
5gnj_F4e-13120174963Transcription factor MYC2
5gnj_G4e-13120174963Transcription factor MYC2
5gnj_I4e-13120174963Transcription factor MYC2
5gnj_M4e-13120174963Transcription factor MYC2
5gnj_N4e-13120174963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
2124129RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02396.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023400.11e-160PREDICTED: transcription factor bHLH18-like
TrEMBLA0A059B0U30.0A0A059B0U3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010023400.11e-159(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-50bHLH family protein