PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02391.1.p
Common NameEUGRSUZ_H02391
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 311aa    MW: 35610.1 Da    PI: 6.952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02391.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13134181355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ + f  L  ++P +     kK++Ka+iL  A++Y+k+Lq
  Eucgr.H02391.1.p 134 QEHVIAERKRRQKLSQNFIALSAIIPGL-----KKMDKASILGDAIKYMKQLQ 181
                       5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-11134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-16135195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-11136185No hitNo description
SMARTSM003538.4E-14137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MYHPQQMTNP FDFPLDDFGF NLFSSEMDSP HALWDPETMR ALMDPRVQAA PTIMERPMKK  60
LKTEIRSNTC SPETNIAPRT VMCSPSSSPQ LISFGRLDLS PVESQQHYGS HEIRDCQKEM  120
KRDGAMSRST LHTQEHVIAE RKRRQKLSQN FIALSAIIPG LKKMDKASIL GDAIKYMKQL  180
QERVKKLEEE VAIRTVESVV IVKKSQVLAD DDMSLDENFY DQFEQRLPEI EARVLDRYAL  240
FRIHHEKRKG YTTEILSEIE KLNLSVLNSS VLPFGSSMLD MTIVAQMDVG FCMKAEDLVK  300
NLRQSLLKII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-14136190963Transcription factor MYC2
5gnj_B8e-14136190963Transcription factor MYC2
5gnj_E8e-14136190963Transcription factor MYC2
5gnj_F8e-14136190963Transcription factor MYC2
5gnj_G8e-14136190963Transcription factor MYC2
5gnj_I8e-14136190963Transcription factor MYC2
5gnj_M8e-14136190963Transcription factor MYC2
5gnj_N8e-14136190963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02391.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026566.20.0PREDICTED: transcription factor NAI1
SwissprotQ9T0724e-52BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A059B1U30.0A0A059B1U3_EUCGR; Uncharacterized protein
STRINGXP_010026566.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-48bHLH family protein