PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H02312.3.p | ||||||||
Common Name | EUGRSUZ_H02312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 32176.1 Da PI: 10.2071 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + k R+ ++k++w++ Eucgr.H02312.3.p 5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDLEfkeilKMRSNVDLKDKWRN 55 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.448 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-15 | 2 | 73 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-12 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.67E-16 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.9E-13 | 117 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 23.876 | 119 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 3.3E-15 | 120 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.54E-16 | 122 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 6.5E-10 | 124 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDLEFKEI LKMRSNVDLK DKWRNINVTA 60 IWGSRQKARL ALKKNLLTPK HDSNTLALAS ARNDEEILDA TPLAVSGETI NNANPKERMK 120 SRLDNLIIEA LTNLKDPSGS DRAAIAAYIE DQYLAPPNLK KLLSAKLKLM IANGKLIKVK 180 HRYRIAQNPK TMEARRGSSR SIVEGRPKDS FKGDKREVKI YTKTQIDAEL LKMKSMTAQE 240 AAAAAAKAVA EAEAAMAEAE EAAREAEAAE AEAEAAQIFA QAAINALKCG TLHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H02312.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010023318.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1 isoform X3 | ||||
Swissprot | Q8VWK4 | 9e-78 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A059B0L9 | 0.0 | A0A059B0L9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010023316.1 | 1e-164 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 6e-69 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H02312.3.p |
Publications ? help Back to Top | |||
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