PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02312.1.p
Common NameEUGRSUZ_H02312, LOC104414026
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 300aa    MW: 32834.8 Da    PI: 10.1372
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02312.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12555146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                      +++WT+eE+  l+ +v ++G g W+tI   +      k R+  ++k++w++
  Eucgr.H02312.1.p  5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDLEfkeilKMRSNVDLKDKWRN 55
                      79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.448161IPR017930Myb domain
SuperFamilySSF466898.97E-15273IPR009057Homeodomain-like
SMARTSM007171.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12556IPR009057Homeodomain-like
PfamPF002491.0E-8555IPR001005SANT/Myb domain
CDDcd116604.06E-16657No hitNo description
SMARTSM005262.9E-9117187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.023119192IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.5E-14120196IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.37E-14122200IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.0E-8124185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDLEFKEI LKMRSNVDLK DKWRNINVTA  60
IWGSRQKARL ALKKNLLTPK HDSNTLALAS ARNDEEILDA TPLAVSGETI NNANPKERMK  120
SRLDNLIIEA LTNLKDPSGS DRAAIAAYIE DFHMQDQYLA PPNLKKLLSA KLKLMIANGK  180
LIKVKHRYRI AQNPKTMEAR RGSSRSIVEG RPKDSFKGDK REVKIYTKTQ IDAELLKMKS  240
MTAQEAAAAA AKAVAEAEAA MAEAEEAARE AEAAEAEAEA AQIFAQAAIN ALKCGTLHA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02312.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023317.10.0PREDICTED: telomere repeat-binding factor 1 isoform X2
SwissprotQ8VWK43e-75TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A059B1M30.0A0A059B1M3_EUCGR; Uncharacterized protein
STRINGXP_010023316.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-66telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]