PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02157.1.p
Common NameEUGRSUZ_H02157
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 726aa    MW: 82850.1 Da    PI: 7.5753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.5e-16671715147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++++E+e ++ +++ lG++ W+ Ia++++ gRt++++k++w+++
  Eucgr.H02157.1.p 671 RGSFSAQEEEVIIALHQILGNR-WSQIASHLP-GRTDNEVKNFWNSL 715
                       899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522002.88E-404157IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101403.9E-2211147IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010427.18313154IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002552.3E-4414154IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015822.1E-4415177IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525402.25E-49184443IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.3E-9208366IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.8E-23209450IPR002182NB-ARC
PRINTSPR003647.8E-16214229No hitNo description
PRINTSPR003647.8E-16291305No hitNo description
PRINTSPR003647.8E-16384398No hitNo description
SuperFamilySSF467851.01E-9425524IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR003647.8E-16554570No hitNo description
SuperFamilySSF466891.48E-12670718IPR009057Homeodomain-like
PROSITE profilePS5129417.808670720IPR017930Myb domain
SMARTSM007171.1E-15670718IPR001005SANT/Myb domain
PfamPF002491.0E-13671715IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-19672714IPR009057Homeodomain-like
CDDcd001676.46E-10673715No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MASSSSSSSK RKRSHDVFLS FRGTDVRNNF LSHLYTALYQ NGISTYIDSK EMRKGDQIRP  60
ALMKAIEESQ FAIIIFSKDY ASSSWCLEEV AKIMECKTQK DLIVLPVFYK VEPREVRWGR  120
GSYGRDMAKH ESDFGKDSHK VKRWKKALFD ASELSGWTLN DEVEAELIKE IVSKISMQID  180
QRLVHVAEHL IGIHPRLIEL NSMLKLGSDE DVRMIGLWGP GGIGKTTLGL ALYDNISRQF  240
EGSCFLADVC KALEGPKDLA ALQSQLLSNI LPGRRLVVSN VHKGISLMQN NLYRKKVLLV  300
LDNVTDRSQL DALAGNLEWF GAGSRIIFIT RDKHLLISRR IDEDYIYEVK PLENCDAFEL  360
LRRHAFPSNN SVRRDLVDKV LHYANGHPLT LKELGCSLYC RSEREWESSL RILAKILKKT  420
SNDTFKWSYD GLDDNAKEIC LDIACFFTGY TKEYIMKVLD SCDFEPTIGV KVLVEKSLVT  480
KERETLQMCN MIRLMAMDII RQEHPNDPGR RSRLWLFDDF RNVLSRQSVT DALQSIVLIL  540
PEPEKINIGP NALTNLRRLK KLIMKNVHNS FQDPIYLPNE LKWFEWPECH PCITESSSGP  600
EESAQLALHE SNIQALNKQF EGPKKLESNN FSECPSLVYV PIFDWTPNRV PLDLHGFGKL  660
ESLVLLHLGK RGSFSAQEEE VIIALHQILG NRWSQIASHL PGRTDNEVKN FWNSLHKEEA  720
PRSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A2e-4481871177TIR-NB-LRR type resistance protein RPV1
5ku7_B2e-4481871177TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914KRKRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02157.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026479.10.0PREDICTED: TMV resistance protein N
TrEMBLA0A059B0Q00.0A0A059B0Q0_EUCGR; Uncharacterized protein
STRINGXP_010026479.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-70WRKY family protein