PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01682.1.p
Common NameEUGRSUZ_H01682
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 257aa    MW: 28014.2 Da    PI: 9.517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01682.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08163203954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Eucgr.H01682.1.p 163 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 203
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14158213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-6177208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDVDMIKLSP EDHMDIMKIL MQPEKYPDLY DTSHHDLSEH SGSTGLGAGS YLPPLHQRSP  60
VAPISQSPAT IPFIGNHPVH DPASAPLLAN FYKSGGGPVP AGGSMGAYMS GNSLHEKRNS  120
MAAMREMIFR IAAMQPIHID LESIKPPKRR NVKISKDPQS VAARHRRERI SERIRILQRL  180
VPGGTKMDTA SMLDEAIHYV KFLKKQVQCL EEAAVSNTGK RMGIGFPVSP EAAAAAATAM  240
GNLNYSHLGK DFQSGQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01682.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070352.10.0PREDICTED: transcription factor HEC2
TrEMBLA0A059AZ780.0A0A059AZ78_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010070352.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-43bHLH family protein