PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01196.1.p
Common NameEUGRSUZ_H01196, LOC104456818
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 486aa    MW: 51314.4 Da    PI: 8.8074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01196.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.7e-116186227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      +++ C +++rtG+C +G+rC+++H++
  Eucgr.H01196.1.p 61 GMPDCAYYMRTGFCGFGSRCRYNHPR 86
                      6899********************96 PP
2zf-CCCH40.16.1e-13105131127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+f+++tGtCk+G++CkF+H++
  Eucgr.H01196.1.p 105 PGEPACQFYLKTGTCKFGASCKFHHPK 131
                       57899********************96 PP
3zf-CCCH35.71.5e-11154177427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        +C+++++tG+Ck+G +CkF+H++
  Eucgr.H01196.1.p 154 QECSYYLKTGQCKFGTTCKFHHPQ 177
                       68********************97 PP
4zf-CCCH375.7e-12310334327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++++rtG Ck+G++C+++H++
  Eucgr.H01196.1.p 310 EPDCQYYMRTGDCKFGSSCRYHHPR 334
                       789********************96 PP
5zf-CCCH32.61.4e-10357380427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ ++G+CkyG++CkF H++
  Eucgr.H01196.1.p 357 LPCAFYVQNGHCKYGSTCKFDHPM 380
                       58********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-65986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4275987IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-86186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-66488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-46586IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023104132IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4110130IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577150178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6152178IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4156176IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15307335IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9310334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6312336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4313334IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6357384IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8357380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5358379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MELYGRNPGR NGSQSGQHPS EWGPVGGGET GLEESMWHLG LGGGGGSGGG GGSESYPERS  60
GMPDCAYYMR TGFCGFGSRC RYNHPRDRAA VVAAVRATGD YPERPGEPAC QFYLKTGTCK  120
FGASCKFHHP KNGGGSLNRV PLNMYGYPLR LGEQECSYYL KTGQCKFGTT CKFHHPQPAG  180
ASIPASAPQF YSPVQSPSVP TPDQYRGAST SLRVARPPLV PGSYVPGAYG HVLISPGVVP  240
VPGWSPYSAP VSPALSPGAR PAMGATSLYD VAQLTSSTPA IAGSYPSIPS SAGPWGSSQK  300
EQIFPQRAGE PDCQYYMRTG DCKFGSSCRY HHPRDRMVQG TSFLLNPLGL PLRPGVLPCA  360
FYVQNGHCKY GSTCKFDHPM GAMRYSPSAS SLTDMPVAPY PVGSLIGTLA PSSSSELRPE  420
LVSGSMKDSY STRIPSNETS TSSVGLMFSQ TGSVQLSDVQ FSSHSSASLS SSRSTKPGND  480
VRRSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01196.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069978.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A059AY120.0A0A059AY12_EUCGR; Uncharacterized protein
STRINGXP_010069978.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein