PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H01010.1.p

Common Name

EUGRSUZ_H01010

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 566aa MW: 63634.7 Da PI: 5.7365

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H01010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	272.3	1.5e-83	196	563	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPi 90 +lLl++Ae v ++++ +a++lL+ + las++ +p qR++ +f+eAL+ r+ + ++ +++ ++ +e + + +s+ l++ + P+ Eucgr.H01010.1.p 196 AQLLLAAAEKVGDQQFDCASRLLSYCELLASKRVSPAQRIVLHFVEALRDRMGKeTGRSIS--MKGTEGKAEPVSQGLSFNLTtlkCRRQLPF 286 699************************************************93333333..3333333333444444443344677889 PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 +++++ta q I e + ++ r+H iD++i G+QW+ ++qaLa+R+++p l+iT+vgs + +e+ee g+rLa++Ae++++pf+f+v+ Eucgr.H01010.1.p 287 TQVAQFTALQVIIEHTVSAARIHLIDLQIRSGIQWIVFMQALAERKGEPIeFLKITAVGS----ECREMEEAGKRLASVAESMKIPFSFQVVF 375 ********************************************665549****....99*********************99 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +led++ e ++++ Ea+aV l l ++ ++++sle+ ++ ++++l P v+v++e ea+hns+sF++rf+eal +ys+ fd+le+ + Eucgr.H01010.1.p 376 LPNLEDIREELFNLEDSEAVAVYAPLVLRTMIARPTSLEK----LVGVIRNLDPSVMVMTEVEANHNSPSFVARFVEALFFYSTYFDCLETCM 464 99**********************************....********************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367 +e+e+++ +E+ +++ i+n+v++eg er+ r + Wr+ + + + ++++s+ a+l+ +++ ++ +++ + ++l+ gWk+ p+ Eucgr.H01010.1.p 465 TQEAEDKTIMEEL-FSNGIRNIVSAEGHERVTRSVKIDVWRAFFARYRMVEIEFSDASIYHAHLVAKQFTcERFCTLDRDGNCLLVGWKGTPM 556 9999999999998.****************************************************88878999*********** PP GRAS 368 vsvSaWr 374 +s+SaW+ Eucgr.H01010.1.p 557 FSLSAWK 563 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.954	169	542	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-81	196	563	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MANISFSFPS FGFGEGYVLD GLDKERRATK GVQEHRGEDV AEPHPFFSGF GSQQGNLSSK 60 GVHLPDPSQQ LAANSMVLDR FNLKVSSPPA LGSEESLEFG NTRKPMVLPS SKASLELLSN 120 YWTVLKKSKR DQPREPNSEV PVSQPKLSTE EIMRVAGTRY IQFQDQRDDY FSLLTRPYGP 180 TFSGLSEEDL KEVELAQLLL AAAEKVGDQQ FDCASRLLSY CELLASKRVS PAQRIVLHFV 240 EALRDRMGKE TGRSISMKGT EGKAEPVSQG LSFNLTTLKC RRQLPFTQVA QFTALQVIIE 300 HTVSAARIHL IDLQIRSGIQ WIVFMQALAE RKGEPIEFLK ITAVGSECRE MEEAGKRLAS 360 VAESMKIPFS FQVVFLPNLE DIREELFNLE DSEAVAVYAP LVLRTMIARP TSLEKLVGVI 420 RNLDPSVMVM TEVEANHNSP SFVARFVEAL FFYSTYFDCL ETCMTQEAED KTIMEELFSN 480 GIRNIVSAEG HERVTRSVKI DVWRAFFARY RMVEIEFSDA SIYHAHLVAK QFTCERFCTL 540 DRDGNCLLVG WKGTPMFSLS AWKFQ*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MANISFSFPS FGFGEGYVLD GLDKERRATK GVQEHRGEDV AEPHPFFSGF GSQQGNLSSK  60
GVHLPDPSQQ LAANSMVLDR FNLKVSSPPA LGSEESLEFG NTRKPMVLPS SKASLELLSN  120
YWTVLKKSKR DQPREPNSEV PVSQPKLSTE EIMRVAGTRY IQFQDQRDDY FSLLTRPYGP  180
TFSGLSEEDL KEVELAQLLL AAAEKVGDQQ FDCASRLLSY CELLASKRVS PAQRIVLHFV  240
EALRDRMGKE TGRSISMKGT EGKAEPVSQG LSFNLTTLKC RRQLPFTQVA QFTALQVIIE  300
HTVSAARIHL IDLQIRSGIQ WIVFMQALAE RKGEPIEFLK ITAVGSECRE MEEAGKRLAS  360
VAESMKIPFS FQVVFLPNLE DIREELFNLE DSEAVAVYAP LVLRTMIARP TSLEKLVGVI  420
RNLDPSVMVM TEVEANHNSP SFVARFVEAL FFYSTYFDCL ETCMTQEAED KTIMEELFSN  480
GIRNIVSAEG HERVTRSVKI DVWRAFFARY RMVEIEFSDA SIYHAHLVAK QFTCERFCTL  540
DRDGNCLLVG WKGTPMFSLS AWKFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-33	203	562	26	377	Protein SCARECROW
5b3h_D	4e-33	203	562	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H01010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026092.2	0.0	PREDICTED: protein SCARECROW 1
TrEMBL	A0A059AWT1	0.0	A0A059AWT1_EUCGR; Uncharacterized protein
STRING	XP_010026092.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16533	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-52	RGA-like 1

Link Out ? help Back to Top
Phytozome	Eucgr.H01010.1.p