 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Eucgr.H00573.1.p |
| Common Name | EUGRSUZ_H00573, LOC104456383 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 286aa MW: 31507.2 Da PI: 10.33 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Eucgr.H00573.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 329.7 | 8e-101 | 1 | 285 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82
md d+s + rn+gyyep+a+++ lgl+lmss++e+ r++ + +++ +a+++rd m++ +rd++++ ++k++
Eucgr.H00573.1.p 1 MDGDNSLNmRNWGYYEPTATMR-GLGLNLMSSVPEKPLFDsRSAAVMAASNGSAYHHRDlgasqavypMDY-MRDAWMSP--------REKFF 83
899999999*********9998.9**********998765366666555566789****************.9******9........67888 PP
GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseksk 175
+ + +++ ++++++t++++++q+++ p+l+ + e ++ + + +e+ e+ +kkr +k pk++k kk+k+ ++++k
Eucgr.H00573.1.p 84 NPMSGNHN--------YSMIPETSTAHHMQMVQPPDLS-------KDERATQVEQVGIGNEIIENGPSKKRPGPKGPKSPKPKKAKRGPRAPK 161
88887775........89*************5444443.......334444444455677788888888899999************998887 PP
GAGA_bind 176 kkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
+++++ +r+++ kk+++l +ng+++D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt +S+yPLP+stkrrgaRiagrKmS gafkk+
Eucgr.H00573.1.p 162 AETAPSV--PRARTIKKTTELMINGINMDISCIPIPVCSCTGTPQQCYRWGSGGWQSACCTTGLSMYPLPMSTKRRGARIAGRKMSIGAFKKV 252
7777776..89********************************************************************************** PP
GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LekLaaeGy++ np+DL++hWAkHGtnkfvtir
Eucgr.H00573.1.p 253 LEKLAAEGYNFTNPIDLRTHWAKHGTNKFVTIR 285
********************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MDGDNSLNMR NWGYYEPTAT MRGLGLNLMS SVPEKPLFDS RSAAVMAASN GSAYHHRDLG 60
ASQAVYPMDY MRDAWMSPRE KFFNPMSGNH NYSMIPETST AHHMQMVQPP DLSKDERATQ 120
VEQVGIGNEI IENGPSKKRP GPKGPKSPKP KKAKRGPRAP KAETAPSVPR ARTIKKTTEL 180
MINGINMDIS CIPIPVCSCT GTPQQCYRWG SGGWQSACCT TGLSMYPLPM STKRRGARIA 240
GRKMSIGAFK KVLEKLAAEG YNFTNPIDLR THWAKHGTNK FVTIR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
