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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H00042.1.p | ||||||||
Common Name | EUGRSUZ_H00042, LOC104456018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19684.6 Da PI: 7.6267 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.3 | 1.5e-16 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r++tf kR+ g+lKKA+EL +LC+++ + ii+ + Eucgr.H00042.1.p 10 LITNDSVRKTTFRKRKGGLLKKASELKTLCGVDTCAIIYTAN 51 599******************************997776543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.787 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.46E-27 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 6.02E-25 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-17 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRRKVRLEL ITNDSVRKTT FRKRKGGLLK KASELKTLCG VDTCAIIYTA NDAEPHVWPS 60 PEDAQRVLER FQSLPSKKQG KHMLNHEDYR PKDVSMLELK LENGIKRNQD LEMELLLLDH 120 LSGKNVVDLI KDDEMKMLYQ SVDDKIRDLT LQMANLKASE VEEDAHSTAP AN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVRLELITNDSVRKTTFRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H00042.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069013.1 | 1e-125 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A059ATZ4 | 1e-123 | A0A059ATZ4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069013.1 | 1e-124 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 6e-28 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H00042.1.p |
Entrez Gene | 104456018 |