PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YA

Protein Properties

Length: 151aa MW: 16669.8 Da PI: 10.6462

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G03377.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.2	2e-31	9	65	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR Rak+e ++k k+rkpylheSRh+hA+rRpRgsgGrF Eucgr.G03377.1.p 9 EEPVYVNAKQYHGILRRRRIRAKAELDRKA-VKGRKPYLHESRHRHAMRRPRGSGGRF 65 69************************99.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.0E-34	7	68	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.858	8	68	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.0E-27	10	65	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-24	11	33	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	13	33	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.3E-24	42	65	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MPLPLEMAEE PVYVNAKQYH GILRRRRIRA KAELDRKAVK GRKPYLHESR HRHAMRRPRG 60 SGGRFLNTKR LDSDDSSFAA EKAVNSSVDL PTQFVKTSTA QGFQTRSMRA DSTGSNGNAS 120 ANGLSYQGIS CLGAEKETLQ LYEGPNGAYK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	9	73	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	58	RHRHAMRRPR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G03377.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067868.1	1e-107	PREDICTED: nuclear transcription factor Y subunit A-9
Swissprot	Q945M9	2e-32	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A059BJ90	1e-107	A0A059BJ90_EUCGR; Uncharacterized protein
STRING	XP_010067868.1	1e-106	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16019	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	7e-35	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	Eucgr.G03377.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]