PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G03258.2.p | ||||||||
Common Name | EUGRSUZ_G03258, LOC104454562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 468aa MW: 52654.5 Da PI: 6.2809 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 444.9 | 5.7e-136 | 50 | 464 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++ L+ cA++v++g+ +a+ +L+++s++aspdgd+mqR+aayfteALa r+++ +++l kal++++ s+ +see+ + + f+e++P+lk++ Eucgr.G03258.2.p 50 IRYLIGCANHVAAGSVDNANICLEQISHHASPDGDTMQRIAAYFTEALADRILKGWPGLHKALNSTKISP--VSEEILVKRWFFELCPFLKLA 140 688************************************************************9999985..********************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 ++++NqaIlea++ge++vHiiD++ +++QW++Llq+L +Rpegpp+lRiTg+++ +ke l +++ rL++ Ae+l++pf+fn+ v+ +le Eucgr.G03258.2.p 141 YVITNQAILEAMDGEKMVHIIDLNSFEPAQWVNLLQSLRARPEGPPHLRITGIHE----QKEVLDQMALRLNEEAEKLDIPFQFNP-VVCKLE 228 *******************************************************....9**************************.6888** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll..................................................desvsleserdevLkl 230 +l+le+Lrvk+gEala+++vlqlh++l d+ + ++ + +L Eucgr.G03258.2.p 229 NLDLESLRVKTGEALAISSVLQLHTILaaddemqrrtspsasnssnsshqqralhmkqrtlgewlekdvvnlycaspDSALVSSPKMGGFLTS 321 ***************************************************************************97554444447999**** PP GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +++lsPk++v++eqe++hn ++++er +eal++y +lfd+le+++pr+s er+kvE++l+g+ei+n++aceg +r+erhe+lekW rle aG Eucgr.G03258.2.p 322 LWGLSPKLMVITEQESNHN-GTLMERYVEALYFYGSLFDCLESTVPRASVERQKVEKMLFGEEIKNIIACEGIQRKERHEKLEKWILRLELAG 413 ******************6.68*********************************************************************** PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 F++v+ls++ qa +ll++++ dgy+++ee+g+l+l+W+drpL+svSaWr Eucgr.G03258.2.p 414 FGKVSLSYNGLLQAGRLLQNYGYDGYTLKEENGCLLLCWHDRPLFSVSAWR 464 **************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.904 | 23 | 444 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-133 | 50 | 464 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MTGMLHDEGS SPVTSSPLQM FSLMSLSPGI GSPYPLLREV SPEDRGLWLI RYLIGCANHV 60 AAGSVDNANI CLEQISHHAS PDGDTMQRIA AYFTEALADR ILKGWPGLHK ALNSTKISPV 120 SEEILVKRWF FELCPFLKLA YVITNQAILE AMDGEKMVHI IDLNSFEPAQ WVNLLQSLRA 180 RPEGPPHLRI TGIHEQKEVL DQMALRLNEE AEKLDIPFQF NPVVCKLENL DLESLRVKTG 240 EALAISSVLQ LHTILAADDE MQRRTSPSAS NSSNSSHQQR ALHMKQRTLG EWLEKDVVNL 300 YCASPDSALV SSPKMGGFLT SLWGLSPKLM VITEQESNHN GTLMERYVEA LYFYGSLFDC 360 LESTVPRASV ERQKVEKMLF GEEIKNIIAC EGIQRKERHE KLEKWILRLE LAGFGKVSLS 420 YNGLLQAGRL LQNYGYDGYT LKEENGCLLL CWHDRPLFSV SAWRFRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-67 | 56 | 466 | 26 | 381 | Protein SCARECROW |
5b3h_A | 1e-67 | 56 | 466 | 25 | 380 | Protein SCARECROW |
5b3h_D | 1e-67 | 56 | 466 | 25 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G03258.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067760.1 | 0.0 | PREDICTED: scarecrow-like protein 3 isoform X1 | ||||
Refseq | XP_010067761.1 | 0.0 | PREDICTED: scarecrow-like protein 3 isoform X1 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A059BJV9 | 0.0 | A0A059BJV9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067760.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G03258.2.p |
Entrez Gene | 104454562 |
Publications ? help Back to Top | |||
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