PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03258.1.p
Common NameEUGRSUZ_G03258
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 472aa    MW: 53063.9 Da    PI: 6.4571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03258.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.85.9e-136504642374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++ L+ cA++v++g+  +a+ +L+++s++aspdgd+mqR+aayfteALa r+++ +++l kal++++ s+  +see+ + + f+e++P+lk++
  Eucgr.G03258.1.p  50 IRYLIGCANHVAAGSVDNANICLEQISHHASPDGDTMQRIAAYFTEALADRILKGWPGLHKALNSTKISP--VSEEILVKRWFFELCPFLKLA 140
                       688************************************************************9999985..********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       ++++NqaIlea++ge++vHiiD++  +++QW++Llq+L +Rpegpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+fn+ v+ +le
  Eucgr.G03258.1.p 141 YVITNQAILEAMDGEKMVHIIDLNSFEPAQWVNLLQSLRARPEGPPHLRITGIHE----QKEVLDQMALRLNEEAEKLDIPFQFNP-VVCKLE 228
                       *******************************************************....9**************************.6888** PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll..................................................desvsleserdevLkl 230
                       +l+le+Lrvk+gEala+++vlqlh++l                                                  d+ + ++ +   +L  
  Eucgr.G03258.1.p 229 NLDLESLRVKTGEALAISSVLQLHTILaaddemqrrtspsasnssnsshqqralhmkqrtlgewlekdvvnlycaspDSALVSSPKMGGFLTS 321
                       ***************************************************************************97554444447999**** PP

              GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                       +++lsPk++v++eqe++hn ++++er +eal++y +lfd+le+++pr+s er+kvE++l+g+ei+n++aceg +r+erhe+lekW  rle aG
  Eucgr.G03258.1.p 322 LWGLSPKLMVITEQESNHN-GTLMERYVEALYFYGSLFDCLESTVPRASVERQKVEKMLFGEEIKNIIACEGIQRKERHEKLEKWILRLELAG 413
                       ******************6.68*********************************************************************** PP

              GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       F++v+ls++   qa +ll++++ dgy+++ee+g+l+l+W+drpL+svSaWr
  Eucgr.G03258.1.p 414 FGKVSLSYNGLLQAGRLLQNYGYDGYTLKEENGCLLLCWHDRPLFSVSAWR 464
                       **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.90423444IPR005202Transcription factor GRAS
PfamPF035142.0E-13350464IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MTGMLHDEGS SPVTSSPLQM FSLMSLSPGI GSPYPLLREV SPEDRGLWLI RYLIGCANHV  60
AAGSVDNANI CLEQISHHAS PDGDTMQRIA AYFTEALADR ILKGWPGLHK ALNSTKISPV  120
SEEILVKRWF FELCPFLKLA YVITNQAILE AMDGEKMVHI IDLNSFEPAQ WVNLLQSLRA  180
RPEGPPHLRI TGIHEQKEVL DQMALRLNEE AEKLDIPFQF NPVVCKLENL DLESLRVKTG  240
EALAISSVLQ LHTILAADDE MQRRTSPSAS NSSNSSHQQR ALHMKQRTLG EWLEKDVVNL  300
YCASPDSALV SSPKMGGFLT SLWGLSPKLM VITEQESNHN GTLMERYVEA LYFYGSLFDC  360
LESTVPRASV ERQKVEKMLF GEEIKNIIAC EGIQRKERHE KLEKWILRLE LAGFGKVSLS  420
YNGLLQAGRL LQNYGYDGYT LKEENGCLLL CWHDRPLFSV SAWRFRSKRH G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-685646726382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03258.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733387.10.0PREDICTED: scarecrow-like protein 3 isoform X2
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A059BID60.0A0A059BID6_EUCGR; Uncharacterized protein
STRINGXP_010067760.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]