PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G03225.1.p

Common Name

EUGRSUZ_G03225, LOC104454533

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 341aa MW: 37275.2 Da PI: 10.3078

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G03225.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.5e-15	51	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + +++ s++p++ +l+ Eucgr.G03225.1.p 51 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNSTKSPKTQTQCKNKIESMKKRYRTESATADT------SSWPLYPRLD 134 5***********************************88777778889999*************9999986......5799999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.1E-20	49	135	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MDKEGNQEPP SLLPNNSTVK LEESPRKSAT ASGALGGGGG GGGGDRLKRD EWSEGAVSSL 60 LEAYETKWVL RNRAKLKGHD WEDVARHVSS RANSTKSPKT QTQCKNKIES MKKRYRTESA 120 TADTSSWPLY PRLDMLLRGT APPQLPLAPP PFSQPLASNP PPLILLEPSS AAAVPQLLPL 180 SGPPPPPPPG NAQNSHGSNG VDKLPKEDGA GTKLSDQVSD KNPVETDSST PALYSDKQKS 240 SRSKKHKTVM KMEKNKKRRK REEYGIAESI RWLAEVIVRS EQSRMETMKE LEKMRIEAEA 300 RRGEMDLKRT EIIANTQLEI AKLFAGSNKG IDSSLRIGRN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	259	KKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G03225.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067722.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A059BI69	0.0	A0A059BI69_EUCGR; Uncharacterized protein
STRING	XP_010067722.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-105	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Eucgr.G03225.1.p
Entrez Gene	104454533