PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G03089.1.p | ||||||||
Common Name | EUGRSUZ_G03089, LOC104454420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18685.4 Da PI: 7.4659 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.6 | 1.3e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+Cak+C++apyfp ++p++fa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ + Eucgr.G03089.1.p 6 PCASCKLLRRRCAKGCIFAPYFPPDDPHRFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVAQLQMQ 98 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e Eucgr.G03089.1.p 99 LAVAQAE 105 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.691 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGGNSPCASC KLLRRRCAKG CIFAPYFPPD DPHRFAIVHK VFGASNISKM LQELPVHQRA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVAQLQMQLA VAQAEILCIQ VQQEPVAMPS 120 PVVPMDSSDD KSFFLHNNLP QYFNLASNSS NVTHESLKRE SFFGHDMVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-51 | 2 | 119 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-51 | 2 | 119 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G03089.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067560.1 | 1e-123 | PREDICTED: LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 5e-74 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A059BHX3 | 1e-122 | A0A059BHX3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067560.1 | 1e-123 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G03089.1.p |
Entrez Gene | 104454420 |
Publications ? help Back to Top | |||
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