PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02941.1.p
Common NameEUGRSUZ_G02941, LOC104454304
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 735aa    MW: 81288.6 Da    PI: 6.9718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02941.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.71.7e-1163537241374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+ v+ +d + a+ +L+++++++sp+gd mqR a+yf+++L+arla+s++++y  + +++ts    +++l+a++l+  ++P +k+
  Eucgr.G02941.1.p 353 LRTLLTLCAQSVAVDDRRSANDMLKQIRQHSSPTGDGMQRTAHYFANGLEARLAGSGTQIYTGIMSKPTS---AASVLKAHRLLLAACPSPKI 442
                       5789************************************************************999999...8999**************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                        ++  N++I + +e+++r+HiiDf+i +G+QWp L++ L+sRp+gpp++RiTg++ p++g   +e++eetg+rL+++A+++gvpfefn+ +a+
  Eucgr.G02941.1.p 443 VNFFSNKTITNVAENATRLHIIDFGILYGFQWPGLIKRLSSRPGGPPKIRITGIDFPQPGfkPTERVEETGRRLKNYAKTFGVPFEFNA-IAQ 534
                       ***********************************************************999***************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       r+++++le+Lr++++E+l+Vn++ +l++llde+v +es+rd v++l ++++P v+++   +  h+++ F  rf eal ++s++fd+l++++pr
  Eucgr.G02941.1.p 535 RWDTIQLEDLRIDKDEVLVVNCICRLKNLLDETVVTESPRDIVVNLTRKMNPAVFILGVTNGAHSAPFFISRFREALFHFSTMFDMLDTNVPR 627
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +  er+ +E+e++g+e++nv+aceg+er+er et+++W+ r+++ GF+p+pl+e++++++k  ++    + y v+e+ ++l+lgWk+r + ++
  Eucgr.G02941.1.p 628 DIPERMLLEKEFFGWEAMNVIACEGSERIERPETYKQWQVRFTRGGFTPLPLNEEIVEKVKDRVKSNCHKDYVVDENGQWLLLGWKGRIVRAF 720
                       ****************************************************************9988788********************** PP

              GRAS 371 SaWr 374
                       S W+
  Eucgr.G02941.1.p 721 STWK 724
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.08327704IPR005202Transcription factor GRAS
PfamPF035146.0E-114353724IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MDGRVGDVYS RAYGNSRGDV AAAVVPDYNL VRRLRIDDGD NGRNSVGGAV PLSSDLNLPR  60
VALSLSSVNS EKESVEDCDF SDGVLEYINE ILMEEDVEEK ACTFQESAAL QAAEKSFYEI  120
IGKTYPPSQN SHPISRTDIN HDSPADLSAI YPGNLCGYNS VKPGWSCDMG EPRASAPSFV  180
SSSHTSVSSP YSSNSPITDG FADSPVSILR LPELLSEKVK GVEEGSKFLP NNSSPSANLE  240
KNSLSSTIPE NDAISTVREV EKTMGSGRSN KSRGKKNSHS ENVCLEESRS HKHSSLSTES  300
DVSSDMFDAV LLSKDDPLRE ELQRAQQNGQ TKGSNGKKGR VKKQGREKDI VDLRTLLTLC  360
AQSVAVDDRR SANDMLKQIR QHSSPTGDGM QRTAHYFANG LEARLAGSGT QIYTGIMSKP  420
TSAASVLKAH RLLLAACPSP KIVNFFSNKT ITNVAENATR LHIIDFGILY GFQWPGLIKR  480
LSSRPGGPPK IRITGIDFPQ PGFKPTERVE ETGRRLKNYA KTFGVPFEFN AIAQRWDTIQ  540
LEDLRIDKDE VLVVNCICRL KNLLDETVVT ESPRDIVVNL TRKMNPAVFI LGVTNGAHSA  600
PFFISRFREA LFHFSTMFDM LDTNVPRDIP ERMLLEKEFF GWEAMNVIAC EGSERIERPE  660
TYKQWQVRFT RGGFTPLPLN EEIVEKVKDR VKSNCHKDYV VDENGQWLLL GWKGRIVRAF  720
STWKPSANTC SPKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-503367251379Protein SCARECROW
5b3h_D6e-503367251379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02941.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067415.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_010067417.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_010067418.10.0PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_018715158.10.0PREDICTED: scarecrow-like protein 9 isoform X1
TrEMBLA0A059BHN80.0A0A059BHN8_EUCGR; Uncharacterized protein
STRINGXP_010067414.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein