PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02854.1.p
Common NameEUGRSUZ_G02854, LOC104454230
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 1440aa    MW: 159393 Da    PI: 6.5087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02854.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002813271352123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                        ++C    C ++F+++ +L++H r+ +
  Eucgr.G02854.1.p 1327 HRCDmeGCRMRFKTRAELTVHKRNrC 1352
                        789999****************9877 PP
2zf-C2H212.70.0003913511374223
                        EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                        +Cp   Cgk+Fs++ + + H+r+H
  Eucgr.G02854.1.p 1351 RCPveGCGKRFSSHKYAVLHQRVH 1374
                        69999*****************99 PP
3zf-C2H211.50.0009314101436123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        ykC+   Cg sF+  s++ rH r+  H
  Eucgr.G02854.1.p 1410 YKCKveGCGLSFRFVSDFSRHRRKtgH 1436
                        99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-151556IPR003349JmjN domain
PROSITE profilePS5118313.9931657IPR003349JmjN domain
PfamPF023751.1E-151750IPR003349JmjN domain
SuperFamilySSF511973.57E-27210242No hitNo description
SuperFamilySSF511973.57E-27290460No hitNo description
SMARTSM005584.9E-48293462IPR003347JmjC domain
PROSITE profilePS5118434.124293462IPR003347JmjC domain
PfamPF023732.5E-36327445IPR003347JmjC domain
SMARTSM003551113271349IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.86E-613501386No hitNo description
PROSITE profilePS5015712.09213501379IPR007087Zinc finger, C2H2
SMARTSM003550.02513501374IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-513511378IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013521374IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-913791404IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15713801409IPR007087Zinc finger, C2H2
SMARTSM003550.01213801404IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013821404IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-1013901432No hitNo description
Gene3DG3DSA:3.30.160.603.8E-1114051433IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2214101436IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6414101439IPR007087Zinc finger, C2H2
PROSITE patternPS00028014121436IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1440 aa     Download sequence    Send to blast
MGNVEIPDWL KGLPLAPTFR PTDTEFADPI AYISKIEKEA SAFGICKIVP PLPRPSKKYV  60
FGNLNRSLLK CPESGLGSGS GSGGGSQNAL RKPGSEDNGS DGEAKAVFTT RQQELGQSAK  120
RTKGPGSNTH SGVQKQVWQS GEMYTLEQFE AKSRAFGRSQ LGMVKEASPE VIEALFWQAA  180
SEKPIYVEYA NDVPGSGFGE QDGRFRYFHR RRRMKMDYHR HREGTDSKNN EVDNVQDSHR  240
SETKDLSRGD DSSGLETHKS STSQSGLTTE ETSRACRRSN SGSNELEGTA GWKLSNSPWN  300
LQVIARSSGS LTRFMPDDIP GVTSPMIYIG MLFSWFAWHV EDHELHSMNF LHMGSPKTWY  360
AVPGDYAFSF EEVLRKEAYG GNMDRLAVLS LLGEKTTLLS PEVIVAAGIP CCRLIQNPGE  420
FVVTFPRAYH IGFSHGFNCG EAANFATPQW LRFAKEAAVR RAAMNYLPML SHQQLLYLLT  480
MSFVSRVPMS LIPGARSSRL KDRLREEREL SVKKAFLEDI LNENDLLSSL LRKESTIHAV  540
IWNPHMLPSL SKGSQSPDGT AAISSSEKEN SHHHSGNDSS INLFKEMTMF MEALNDSYVD  600
KDDLLFDFQV DSGTLPCVAC GILGFPFMSV IQPSETASAA LLPTKHYSQQ TCEDRSDISD  660
TASPLMQLQV PSSTDSEKGM GSSGGSRRPR IFCLEHAIQT EELLRSKGGA NVLVICHSDY  720
QKMKAYAGAI AEEIDVSFKY KDIPFDPASE EDLNLIDLAI DDQECTGYRD DDWTSKLGIN  780
LRCCVKARKN SPSNRVQHAL TLGGLFCDDS PSTIFNLKWK SRKSRSRTRL GTPEKCEPCE  840
TLQRKDHEVS RNKLDSDAVR KEEIILQYTR RNAKFKSGSS TGTSRSHGCY DKQPVEVSLA  900
SAGEVHLKSN NQTDNTYCGT ESPVCETADL PVGLGDVSHE IQVLEATTDL TLDLIPAQVA  960
SSLANVTTYV GNVEVQIINQ ASEEMNVKQQ SVGSATYISQ RHSENEFSQN LGGQNEILVS  1020
TDSCFRTVKE TGENIDIVKA TKTREVSDSD VVNDSEVAAV PDARSPSSSL CAKLTSGCEV  1080
HEETALLELK DGRNVKGNAV ACAEATRCGA PMGPHPHVCS GSDEQEDEIH RTVNQSVPLL  1140
IEACTEAPEA TSSEEQGRSY GSAYCKSPEK DRTANATGDE NPVICSVEIM DQQSAASDQG  1200
CSHVQRDSND SNGETNHEDP PCQDDREPQT MESTEVDQVS TTRRRRKRKS ELESIAEDQL  1260
NCSGFIRSPC EGLRSRAGKE TTNGSDCISS SGYENPAKKA RESRKEVKPR KETVSFDDKK  1320
EKRGGSHRCD MEGCRMRFKT RAELTVHKRN RCPVEGCGKR FSSHKYAVLH QRVHEDDRPL  1380
KCPWKGCIMT FKWAWARTEH IRVHTGERPY KCKVEGCGLS FRFVSDFSRH RRKTGHYVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-54269476138346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-54269476138346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112421248RRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02854.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067320.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A059BH790.0A0A059BH79_EUCGR; Uncharacterized protein
STRINGXP_010067320.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]