PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02486.1.p
Common NameEUGRSUZ_G02486
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 290aa    MW: 33221.7 Da    PI: 9.2815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02486.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.6e-54121371128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp k++  e+ewyfF++rd+ky++g r+nrat sgyWkatg+dk+++
  Eucgr.G02486.1.p  12 LPPGFRFHPTDEELIMHYLRNQATSRPCPV-DIIPEVDIYKFDPWQLPDKAEFWENEWYFFTPRDRKYPNGVRPNRATVSGYWKATGTDKAIY 103
                       79****************************.99***************8888899************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s  ++ vg+kk Lvfykgr pkg ktdW+mheyr+
  Eucgr.G02486.1.p 104 S-ASKYVGVKKALVFYKGRPPKGIKTDWIMHEYRM 137
                       *.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6310171IPR003441NAC domain
PROSITE profilePS5100559.42312171IPR003441NAC domain
PfamPF023657.8E-2713137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKGLSVSSGS GLPPGFRFHP TDEELIMHYL RNQATSRPCP VDIIPEVDIY KFDPWQLPDK  60
AEFWENEWYF FTPRDRKYPN GVRPNRATVS GYWKATGTDK AIYSASKYVG VKKALVFYKG  120
RPPKGIKTDW IMHEYRMTEV KGQAKKRSGS MRPWLLLFQL DDWVLCRIYK KRATGKTLEP  180
RIEESNHNVQ ATDKAYANLD ATDPTMLKFP RTFSLTHLLE MDYLAPFSHI LSDNPYSAIF  240
DYQNTISSNN SANDSADQKP HGGHFPHHVA VQNSALNQNM VINPIFDLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-671217620173NAC domain-containing protein 19
3swm_B4e-671217620173NAC domain-containing protein 19
3swm_C4e-671217620173NAC domain-containing protein 19
3swm_D4e-671217620173NAC domain-containing protein 19
3swp_A4e-671217620173NAC domain-containing protein 19
3swp_B4e-671217620173NAC domain-containing protein 19
3swp_C4e-671217620173NAC domain-containing protein 19
3swp_D4e-671217620173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02486.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066895.10.0PREDICTED: NAC transcription factor 29
SwissprotK4BWV21e-115NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A059BFH60.0A0A059BFH6_EUCGR; Uncharacterized protein
STRINGXP_010066895.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77072641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-103NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]