PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G02427.1.p | ||||||||
Common Name | EUGRSUZ_G02427, LOC104453879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28591.7 Da PI: 8.2867 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kR+ng+lKKA+ELSvLCdaeva+iifss+gkl+e++s Eucgr.G02427.1.p 9 KRIENKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSSRGKLHEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 90.5 | 3.1e-30 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ +k ++++q++ Lk ++e+Lq+ qR+llGedL +L++k+L qLe++L+ksl++iRs K++++l q++el+kke++l e+n+aL++k+ee Eucgr.G02427.1.p 84 QDPKKIQHCYQKYVELKMKVESLQHAQRNLLGEDLVELNMKDLDQLEDKLDKSLRQIRSSKTKFMLGQVDELRKKEDMLLEANNALKRKIEE 175 566789************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.548 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.21E-44 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-32 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.1E-24 | 87 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.61 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRKNGLLK KAYELSVLCD AEVALIIFSS RGKLHEFCSG 60 PSMAETIEKY QRCSYDVLEM EASQDPKKIQ HCYQKYVELK MKVESLQHAQ RNLLGEDLVE 120 LNMKDLDQLE DKLDKSLRQI RSSKTKFMLG QVDELRKKED MLLEANNALK RKIEEIDAEL 180 QLSWNANAGD RNVIYNNQAA QLQYNFEPLN YNDASQLGFN PMFTEQRNNL ASSAQTGTTR 240 YIPGWML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-19 | 1 | 79 | 1 | 86 | MEF2 CHIMERA |
6byy_B | 5e-19 | 1 | 79 | 1 | 86 | MEF2 CHIMERA |
6byy_C | 5e-19 | 1 | 79 | 1 | 86 | MEF2 CHIMERA |
6byy_D | 5e-19 | 1 | 79 | 1 | 86 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G02427.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072867 | 3e-67 | AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence. | |||
GenBank | FJ750936 | 3e-67 | FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds. | |||
GenBank | OSU78892 | 3e-67 | U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066815.1 | 0.0 | PREDICTED: MADS-box protein CMB1 | ||||
Swissprot | Q8LLR2 | 2e-94 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A059BGR2 | 0.0 | A0A059BGR2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066815.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7135 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 6e-77 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G02427.1.p |
Entrez Gene | 104453879 |
Publications ? help Back to Top | |||
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