PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 256aa MW: 28893.8 Da PI: 7.885

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G01774.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Eucgr.G01774.1.p 14 KGAWTKEEDDKLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.7	6.4e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde++++++ +lG++ W++Ia +++ gRt++++k++w+++ Eucgr.G01774.1.p 67 RGNFTEEEDEIIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.601	9	61	IPR017930	Myb domain
SMART	SM00717	7.7E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.11E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	3.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.65E-10	16	61	No hit	No description
PROSITE profile	PS51294	29.31	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.06E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDKLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEIIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG 120 IDPATHRLIN EPAQDHHDEP TISFAANSKE IKEMKNNAEL NFMCNLEESA DVASSARERC 180 PDLNLELGIS PPSHQLHQPE PLLRFTGRKS DLCLECNLGL KNSQNCRCSV GVIESETSVG 240 YDFLGLKASV LDYRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G01774.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ576024	0.0	AJ576024.1 Eucalyptus gunnii mRNA for MYB transcription factor (myb1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066271.1	0.0	PREDICTED: myb-related protein 308
Swissprot	P81393	1e-113	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A059BDC2	0.0	A0A059BDC2_EUCGR; Uncharacterized protein
TrEMBL	I0IK11	0.0	I0IK11_EUCGG; MYB transcription factor 1
STRING	XP_010066271.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-104	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Eucgr.G01774.1.p
Entrez Gene	104453423

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]