PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G01448.1.p

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

VOZ

Protein Properties

Length: 265aa MW: 30341.4 Da PI: 5.7136

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G01448.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	213.3	6.8e-66	58	199	18	161
VOZ 18 rpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewl 110 paqgse +qdyc+s ha+la +g p ++pvl +gi+l d+ l++ l ak+qg++vgipec+gaa +kspwna+elfdlsl ege irewl Eucgr.G01448.1.p 58 MPAQGSECFQDYCNSSHADLARSQGGPCMNPVLCTGGISLNDDELLSLLIAKIQGQNVGIPECHGAAIEKSPWNASELFDLSLPEGEHIREWL 150 69***************************************************************************************** PP VOZ 111 ffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqp 161 ffdkprraf+ gn+++rslpdy+gr w++srkq+mk +gg+krs+ymdpqp Eucgr.G01448.1.p 151 FFDKPRRAFKRGNKRKRSLPDYRGR-WYQSRKQLMK-LGGHKRSFYMDPQP 199 ********************9.*****8.8**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDSETKIERE ATTELQIDIK LETDIKPEPD IKLETDIKPE PDIKPKPEPD IEGSAQEMPA 60 QGSECFQDYC NSSHADLARS QGGPCMNPVL CTGGISLNDD ELLSLLIAKI QGQNVGIPEC 120 HGAAIEKSPW NASELFDLSL PEGEHIREWL FFDKPRRAFK RGNKRKRSLP DYRGRWYQSR 180 KQLMKLGGHK RSFYMDPQPD YMDPQPLGFF EWHLFEYEVT SSDFCLYKLR AQAHQLCRKR 240 KGMNDSVVDL QKQMEGSPRK FPGY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G01448.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010052424.1	8e-88	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_010052430.1	7e-88	PREDICTED: transcription factor VOZ1 isoform X2
Refseq	XP_018731294.1	8e-88	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_018731297.1	8e-88	PREDICTED: transcription factor VOZ1 isoform X1
Swissprot	Q9SGQ0	7e-70	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A059BDM4	1e-155	A0A059BDM4_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010052424.1	3e-87	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	7e-66	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Eucgr.G01448.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]