PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00356.2.p
Common NameEUGRSUZ_G00356, LOC104452591
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 344aa    MW: 39537.9 Da    PI: 6.3094
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00356.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004679101323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+   Cgk+F +   L++H   H
  Eucgr.G00356.2.p  79 CSyeGCGKTFIDAGALRKHSHIH 101
                       77779**************7766 PP
2zf-C2H222.33.5e-07106130123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y+C+   Cgk Fs   nL++H++tH
  Eucgr.G00356.2.p 106 YVCHyeGCGKAFSLDFNLRSHMKTH 130
                       9***********************9 PP
3zf-C2H218.26.7e-06136161123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       + Cp  dCgk++ + + Lk+Hi + H
  Eucgr.G00356.2.p 136 HICPypDCGKRYAHEYKLKNHIASqH 161
                       679999****************9988 PP
4zf-C2H215.16.6e-05200225123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       y Cp   C+k + + + Lk H+r+ H
  Eucgr.G00356.2.p 200 YACPyeTCDKAYIHEYKLKLHLRReH 225
                       89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-1472102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576677.1E-980130No hitNo description
Gene3DG3DSA:3.30.160.609.7E-14103130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.778106135IPR007087Zinc finger, C2H2
SMARTSM003557.2E-4106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-8116162No hitNo description
Gene3DG3DSA:3.30.160.601.5E-7131157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.725136166IPR007087Zinc finger, C2H2
SMARTSM003550.003136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-8195222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.18E-6195224No hitNo description
PROSITE profilePS501579.182200225IPR007087Zinc finger, C2H2
SMARTSM003550.039200225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MESHYAHNIF DRRPLLKAKT PAVKWVKEWV PQDVVATGGK CYVLKWVTES TLKALREKEK  60
EPKEPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKAFSLD  120
FNLRSHMKTH SQENYHICPY PDCGKRYAHE YKLKNHIASQ HEKNAAVEVT KYTPPPEKIT  180
TKASKPSSGA YGSASSDRPY ACPYETCDKA YIHEYKLKLH LRREHPEYMA DENAENATRN  240
VDHEMDEASD QDNYSRKRAN GKSQKQSRQK LNLKTPPAKP AKRKGAASPT PVTLNVVKKP  300
WPVKEDIYEE EDSEETEEDQ ENVEGWRYAE NNEDDDEETE YED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-19792218117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00356.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065348.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X2
SwissprotQ2V3L31e-127YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A059B9Q30.0A0A059B9Q3_EUCGR; Uncharacterized protein
STRINGXP_010065347.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]