PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00076.3.p
Common NameEUGRSUZ_G00076
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 650aa    MW: 72666.7 Da    PI: 6.3951
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00076.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23127227198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   +
  Eucgr.G00076.3.p 127 FCKTLTASDTSTHGGFSVLRRHAEEClplldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLIAGDAFIFL--R 215
                       99****************************975544444..8************************************************..4 PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                        +++el+v+v+r
  Eucgr.G00076.3.p 216 GEDGELRVGVRR 227
                       499*******97 PP
2Auxin_resp110.71.5e-36253335183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a  +k+s+GmRfkm+fe+e++serr+sGt++gv d+ ++ W+nS+WrsLk
  Eucgr.G00076.3.p 253 ASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEARAHKLSIGMRFKMKFEGEEVSERRFSGTIIGVGDSMSSGWTNSEWRSLK 335
                       789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-43117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-20125227No hitNo description
PfamPF023629.2E-21127227IPR003340B3 DNA binding domain
SMARTSM010192.3E-21127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237127229IPR003340B3 DNA binding domain
PfamPF065071.7E-34253335IPR010525Auxin response factor
PfamPF023095.8E-6518562IPR033389AUX/IAA domain
PROSITE profilePS5174527.175526619IPR000270PB1 domain
SuperFamilySSF542778.53E-11526604No hitNo description
PfamPF023091.0E-5573616IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MASHPSNHSC GRPHQGAFAD ALYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASTN  60
RGLEQQMPSF DLPSKILCRV VNIQLRAEPE TDEVYSQITL LPEPEQKEVT SPDPPLPEPP  120
RCKVHSFCKT LTASDTSTHG GFSVLRRHAE ECLPLLDMTQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKKLIAGDA FIFLRGEDGE LRVGVRRLMR QQSNMPSSVI  240
SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARAHK LSIGMRFKMK  300
FEGEEVSERR FSGTIIGVGD SMSSGWTNSE WRSLKVQWDE PSSIMRPDRV SSWELEPLVV  360
TAPSNSQQVQ RKRARPTVLP SSSVQELSVF GGPKAPEYSS DFLHGDSQRG RDVYLSPKFS  420
PSARSKSLNY NGNGSPAALS GYTVNWPSHM ETITDPCTPV NGKESSEKRE SGGQRDDDKT  480
ALSVDDDSKE HQEPSCVNHF DNPSACYDPE KSCPNSSQDL QSRQIRTCIK VHMQGIAVGR  540
AVNLAQFNRY EDLLMRFEEM FEIGGELCGS MRKWQVVYTD DEDDMMMVGD DPWNEFCSMA  600
KKIYIYTTEE VKRLLPKIKL PVEDVGPANG GSDVAVNTDD RSSVVGSGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.063584355Auxin response factor 1
4ldw_A0.063584355Auxin response factor 1
4ldw_B0.063584355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00076.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065238.10.0PREDICTED: auxin response factor 1 isoform X1
RefseqXP_010065239.10.0PREDICTED: auxin response factor 1 isoform X1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A059B8Y50.0A0A059B8Y5_EUCGR; Auxin response factor
STRINGXP_010065238.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]