PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04460.1.p
Common NameEUGRSUZ_F04460
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 526aa    MW: 58112.2 Da    PI: 4.9815
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.65e-1071405211374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar....svselykalppsetsekn.........sseelaa 80 
                       lv+ Ll+cAea+  +d++la++lL+++   ++  gd++qR+a +f+ +L++rl+     ++++++++ +p+++              +e+l a
  Eucgr.F04460.1.p 140 LVHSLLACAEAMGCRDMQLADSLLSQIWGSVTWLGDSLQRVAYCFAVGLKSRLSLlhnvNMNGTFSTTTPTNS---PndmspppisREEKLEA 229
                       689*************************************************986311223334444433333...14568999988999*** PP

              GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqG.lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAee 171
                       ++l+++++P++ f+h++aN+aI +a+ g++ +HiiD+++++  lQWp+Ll++LasR+egpp slRiTg+   +++++ ++e+    L++ A++
  Eucgr.F04460.1.p 230 FHLLHQTTPYIAFGHMAANEAIHQAARGSDSLHIIDLGLQHTlLQWPSLLRTLASRTEGPPrSLRITGLIG-DPDHSPMIESAMTSLTHEAAS 321
                       ****************************************9846*************88888******876.56799**************** PP

              GRAS 172 lgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                       lg+ f+fn+++   + + ++ e+L + +gEal Vn+++q+h+ ++es  + +   ++L+++++l P++++v+eq+a+hn++ Fl rfle+l+y
  Eucgr.F04460.1.p 322 LGIIFQFNIVTDPpTPSLFTKEKLGIVEGEALYVNSIMQMHQYVKESRGSLK---SILQAIRKLGPTLLTVIEQDANHNGPFFLGRFLESLHY 411
                       *********7555688889************************987766666...8************************************* PP

              GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                       ysa+fdslea+lpr+s +r+k+E    ++ei+nvvaceg+errerhe++ +Wr++l++aGF+ v l++  ++ a+++l+ ++ dgy++  ++g
  Eucgr.F04460.1.p 412 YSAIFDSLEASLPRNSVQRMKIEGNHYAEEIRNVVACEGSERRERHERADQWRRQLGRAGFQGVGLGK-CMSRARMMLSVYGCDGYTLGTDKG 503
                       ******************************************************************86.799********************* PP

              GRAS 357 slvlgWkdrpLvsvSaWr 374
                       +l+lgWk+rp++ +SaW+
  Eucgr.F04460.1.p 504 CLLLGWKGRPIMLASAWQ 521
                       *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.934114502IPR005202Transcription factor GRAS
PfamPF035141.7E-104140521IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
LEQEQGQPGQ RQEEDDTLWI QIDPHCSPNC DHDNAPHLTS SSEVDEFVDS FINVEDHHIH  60
DHVGEIDGTV ISLDQFEEDT GGFSFSTAND ACGDHVPLMI NSIEGDEMDI ITEKSNQNSE  120
NAQGTVNQEA SQGVDQGLHL VHSLLACAEA MGCRDMQLAD SLLSQIWGSV TWLGDSLQRV  180
AYCFAVGLKS RLSLLHNVNM NGTFSTTTPT NSPNDMSPPP ISREEKLEAF HLLHQTTPYI  240
AFGHMAANEA IHQAARGSDS LHIIDLGLQH TLLQWPSLLR TLASRTEGPP RSLRITGLIG  300
DPDHSPMIES AMTSLTHEAA SLGIIFQFNI VTDPPTPSLF TKEKLGIVEG EALYVNSIMQ  360
MHQYVKESRG SLKSILQAIR KLGPTLLTVI EQDANHNGPF FLGRFLESLH YYSAIFDSLE  420
ASLPRNSVQR MKIEGNHYAE EIRNVVACEG SERRERHERA DQWRRQLGRA GFQGVGLGKC  480
MSRARMMLSV YGCDGYTLGT DKGCLLLGWK GRPIMLASAW QIYGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5614752025377Protein SCARECROW
5b3h_D2e-5614752025377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064080.20.0PREDICTED: DELLA protein RGL1
TrEMBLA0A059BZL30.0A0A059BZL3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010064080.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17612910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-73RGA-like 1