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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F04449.1.p | ||||||||
Common Name | EUGRSUZ_F04449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 224aa MW: 25643.1 Da PI: 8.3754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 16 | 45 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+W++ Ed +l+ ++++G ++W++ ++ Eucgr.F04449.1.p 16 RGPWSPAEDARLISFIQKYGHENWRALPKQ 45 89***********************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-12 | 7 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.661 | 11 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-8 | 11 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-6 | 16 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.53E-5 | 18 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGKGRAPCCD KNKVKRGPWS PAEDARLISF IQKYGHENWR ALPKQAAPRP RIPLRLRSCP 60 VPRLRGMRRW TLNVRRVKVL WMRNLVVRKA WCPCLSPNEA EEVQEKSAKR MPDNKDSKDR 120 SSTFSGSNEP AHLKDSEEQM DSFFSFSSPY DARSALEPEE VNKPDTNSNG LGNFMIDIPF 180 ECDVEFWNML DSLEPFSVHK ADVGQDGLRP GERLPAEGED LSWL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F04449.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065158.1 | 1e-77 | PREDICTED: uncharacterized protein LOC104452397 | ||||
TrEMBL | A0A059C0D4 | 1e-163 | A0A059C0D4_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010065158.1 | 4e-77 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 7e-27 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F04449.1.p |