PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 163aa MW: 17949.3 Da PI: 8.2139

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F04424.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.1	1e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa+vhk+FGasnv k+l++l e++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++ Eucgr.F04424.1.p 13 PCAACKLLRRRCARDCVFAPYFPADQPQKFAIVHKVFGASNVNKMLQELLEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDVLQNQ 105 7****************************************************************************************** PP DUF260 94 lallkee 100 lal+++e Eucgr.F04424.1.p 106 LALAQAE 112 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.559	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MKESGRKQGT LSPCAACKLL RRRCARDCVF APYFPADQPQ KFAIVHKVFG ASNVNKMLQE 60 LLEHQRSDAV SSMVYEANAR MRDPVYGCVG AISSLQQQVD VLQNQLALAQ AEVVHMRLQT 120 PQFPSTSSSA IAATNNDSSH SRRSYYPLNG VEQADVEDSL WS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F04424.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064042.1	1e-119	PREDICTED: LOB domain-containing protein 4 isoform X1
Swissprot	Q9SHE9	2e-65	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A059C0A2	1e-117	A0A059C0A2_EUCGR; Uncharacterized protein
STRING	XP_010064042.1	1e-118	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	9e-44	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Eucgr.F04424.1.p
Entrez Gene	104450999