PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04421.1.p
Common NameEUGRSUZ_F04421
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 612aa    MW: 66095 Da    PI: 6.4451
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04421.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-15278337155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Eucgr.F04421.1.p 278 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 337
                       78*******************655454478446*************************98 PP
2AP2483.2e-15380431155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Eucgr.F04421.1.p 380 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 431
                       78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-17278347IPR016177DNA-binding domain
CDDcd000181.57E-21278347No hitNo description
PfamPF008475.8E-12278337IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-16279346IPR001471AP2/ERF domain
PROSITE profilePS5103219.177279345IPR001471AP2/ERF domain
SMARTSM003801.1E-29279351IPR001471AP2/ERF domain
PRINTSPR003671.5E-6280291IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18380441IPR016177DNA-binding domain
CDDcd000181.67E-24380441No hitNo description
PfamPF008476.3E-10380431IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-18381439IPR001471AP2/ERF domain
PROSITE profilePS5103219.098381439IPR001471AP2/ERF domain
SMARTSM003805.3E-34381445IPR001471AP2/ERF domain
PRINTSPR003671.5E-6421441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSNWLGFSLT PHLKINEDIC REGQAGGGGG GGGAGGGGGG GFPPDITVMP LRSDGSLCVL  60
DPHFRRAPGS EDWSYENADD GEDHRGPKLE DFLGCCYSGS PHGDDEPQNQ NHQATSSAGA  120
GINVNVAPSC FNTGNHPDHH HQCYIESSHA LMVPSAHHNS NDHRCDVDDR MYHHQEHVPF  180
DGGASATTCS VSGFKLWLRQ ANGTATSSSG GLSLTMMSPS SHSDNNINSN AGVGAPISQA  240
PPVGDGSVAK RASSASNNNN NKCVVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS  300
CRKEGQTRKG RQVYLGGYDK EEKAARAYDL AALKYWGPTT HINFPLSTYE KELEEMKNMT  360
RQEFIAHLRR KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE  420
AYDIAAIKFR GTNAVTNFDI SRYDVKRICS SSTLIASDLA KRSPKEATPA LFDHDYNSCA  480
SSSSPQALLA ITNGETSEDF TNMVWSSNMP ESQDPPTIAN TTDGDALIMG SSDHQESPIA  540
VAGHKCSYGS SGDYGCDSRG GRGGEDYSNA YFAMQDQKYE DGSNGSDNNG DNRLGNSSLA  600
HQVPMFALWN E*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04421.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065154.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-131AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A059BYZ20.0A0A059BYZ2_EUCGR; Uncharacterized protein
STRINGXP_010065154.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-126AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]