PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04276.2.p
Common NameEUGRSUZ_F04276, LOC104450884
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 540aa    MW: 60595.5 Da    PI: 4.7119
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04276.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.42.5e-1341705392374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+a+s+g+ ++a+ ++ r+++++s +gdp qR+aay++e+Laar+  s++ lykal+++e +   ss++laa+++++ev+P+++f+
  Eucgr.F04276.2.p 170 KQLLFDCATAISEGNIREASIIIDRVRQIVSIQGDPPQRIAAYMVEGLAARMGASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFRFG 259
                       589*****************************************************************9...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aI ea+ ge+rvHi+DfdisqG Q+++Llq+Las p++ p lR+Tgv++pes+      l+++g+rL+++Ae+l++pfef++ va+r
  Eucgr.F04276.2.p 260 FMAANGAIIEAFRGEKRVHIVDFDISQGSQYITLLQTLASLPGQRPYLRLTGVDDPESVqrPIGGLKNIGQRLENLAEALNIPFEFRA-VASR 351
                       *********************************************************99888899***********************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +  +++ +L+++p+Eal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf ea +yysa+fdsl+a+lpre
  Eucgr.F04276.2.p 352 TPLVTPGMLDLQPREALVVNFAFQLHHMPDESVSMINERDQLLRMVKSLNPKLVTVVEQNVNTNTAPFLVRFGEAYSYYSAVFDSLDATLPRE 444
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s++r++vEr++l+r+i nvvaceg+er+er e ++kWr+r+++aGF + p+s+++++++  l+r+++++ y+++++ g+l +gW++++L+++S
  Eucgr.F04276.2.p 445 SQDRVNVERQCLARDIINVVACEGEERIERYEVAGKWRARMMMAGFASCPMSKSVTESIINLIRQYSER-YKIKDDMGALHFGWEEKSLIVAS 536
                       *******************************************************************66.*********************** PP

              GRAS 372 aWr 374
                       aWr
  Eucgr.F04276.2.p 537 AWR 539
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.59143520IPR005202Transcription factor GRAS
PfamPF035148.7E-132170539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSLIRSTELS ATPYASSEML GSKKHQMMYV SETYSGEDYD PKYFIDSPSE ETINPSSYGM  60
SRNLYHTQGS SINTENPFST SESELMDGQS LDCVEYTEDK MRLKLQELER ALLEDGGDEE  120
EDNMYVDGQW VDQLQINSHD SPKESSSSDS NLSSISTNRE VSQPPSRTPK QLLFDCATAI  180
SEGNIREASI IIDRVRQIVS IQGDPPQRIA AYMVEGLAAR MGASGKFLYK ALKCKEPPSS  240
DRLAAMQILF EVCPCFRFGF MAANGAIIEA FRGEKRVHIV DFDISQGSQY ITLLQTLASL  300
PGQRPYLRLT GVDDPESVQR PIGGLKNIGQ RLENLAEALN IPFEFRAVAS RTPLVTPGML  360
DLQPREALVV NFAFQLHHMP DESVSMINER DQLLRMVKSL NPKLVTVVEQ NVNTNTAPFL  420
VRFGEAYSYY SAVFDSLDAT LPRESQDRVN VERQCLARDI INVVACEGEE RIERYEVAGK  480
WRARMMMAGF ASCPMSKSVT ESIINLIRQY SERYKIKDDM GALHFGWEEK SLIVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6317653826378Protein SCARECROW
5b3h_A1e-6317653825377Protein SCARECROW
5b3h_D1e-6317653825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04276.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063895.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010063896.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010063897.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A059BYH60.0A0A059BYH6_EUCGR; Uncharacterized protein
STRINGXP_010063895.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]