PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F04276.1.p | ||||||||
Common Name | EUGRSUZ_F04276, LOC104450884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 540aa MW: 60595.5 Da PI: 4.7119 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 439.4 | 2.5e-134 | 170 | 539 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL++cA+a+s+g+ ++a+ ++ r+++++s +gdp qR+aay++e+Laar+ s++ lykal+++e + ss++laa+++++ev+P+++f+ Eucgr.F04276.1.p 170 KQLLFDCATAISEGNIREASIIIDRVRQIVSIQGDPPQRIAAYMVEGLAARMGASGKFLYKALKCKEPP---SSDRLAAMQILFEVCPCFRFG 259 589*****************************************************************9...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +++aN aI ea+ ge+rvHi+DfdisqG Q+++Llq+Las p++ p lR+Tgv++pes+ l+++g+rL+++Ae+l++pfef++ va+r Eucgr.F04276.1.p 260 FMAANGAIIEAFRGEKRVHIVDFDISQGSQYITLLQTLASLPGQRPYLRLTGVDDPESVqrPIGGLKNIGQRLENLAEALNIPFEFRA-VASR 351 *********************************************************99888899***********************.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 + +++ +L+++p+Eal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf ea +yysa+fdsl+a+lpre Eucgr.F04276.1.p 352 TPLVTPGMLDLQPREALVVNFAFQLHHMPDESVSMINERDQLLRMVKSLNPKLVTVVEQNVNTNTAPFLVRFGEAYSYYSAVFDSLDATLPRE 444 ********************************************************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 s++r++vEr++l+r+i nvvaceg+er+er e ++kWr+r+++aGF + p+s+++++++ l+r+++++ y+++++ g+l +gW++++L+++S Eucgr.F04276.1.p 445 SQDRVNVERQCLARDIINVVACEGEERIERYEVAGKWRARMMMAGFASCPMSKSVTESIINLIRQYSER-YKIKDDMGALHFGWEEKSLIVAS 536 *******************************************************************66.*********************** PP GRAS 372 aWr 374 aWr Eucgr.F04276.1.p 537 AWR 539 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.59 | 143 | 520 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.7E-132 | 170 | 539 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MSLIRSTELS ATPYASSEML GSKKHQMMYV SETYSGEDYD PKYFIDSPSE ETINPSSYGM 60 SRNLYHTQGS SINTENPFST SESELMDGQS LDCVEYTEDK MRLKLQELER ALLEDGGDEE 120 EDNMYVDGQW VDQLQINSHD SPKESSSSDS NLSSISTNRE VSQPPSRTPK QLLFDCATAI 180 SEGNIREASI IIDRVRQIVS IQGDPPQRIA AYMVEGLAAR MGASGKFLYK ALKCKEPPSS 240 DRLAAMQILF EVCPCFRFGF MAANGAIIEA FRGEKRVHIV DFDISQGSQY ITLLQTLASL 300 PGQRPYLRLT GVDDPESVQR PIGGLKNIGQ RLENLAEALN IPFEFRAVAS RTPLVTPGML 360 DLQPREALVV NFAFQLHHMP DESVSMINER DQLLRMVKSL NPKLVTVVEQ NVNTNTAPFL 420 VRFGEAYSYY SAVFDSLDAT LPRESQDRVN VERQCLARDI INVVACEGEE RIERYEVAGK 480 WRARMMMAGF ASCPMSKSVT ESIINLIRQY SERYKIKDDM GALHFGWEEK SLIVASAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-63 | 176 | 538 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-63 | 176 | 538 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-63 | 176 | 538 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F04276.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010063895.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_010063896.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Refseq | XP_010063897.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A059BYH6 | 0.0 | A0A059BYH6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010063895.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6953 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F04276.1.p |
Entrez Gene | 104450884 |
Publications ? help Back to Top | |||
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