PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F04240.1.p

Common Name

EUGRSUZ_F04240, LOC104450863

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 447aa MW: 51284 Da PI: 6.5464

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F04240.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.2	3.4e-26	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a+++++e++++++ +kk++W+++sk+++erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++ Eucgr.F04240.1.p 121 KWTDKMVRLLITAVSYIGEDSGSDCggggrrkfavlQKKGKWKSISKVLAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPAL 213 7********************9889999999999********************************************56899988888 PP trihelix 82 fdql 85 +d + Eucgr.F04240.1.p 214 LDMI 217 7765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.7E-23	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNMSQGGM IPGNPAYGGL DLQRSMQIHG QAQQSHTLHQ PHHSHPRQTP GVHPSIHEGF 60 PLTMGALPGC DQMISVGDFN KGERCKNSAS DDDDPSFTED GIDNHNDVSK GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED SGSDCGGGGR RKFAVLQKKG KWKSISKVLA ERGYHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDMIEFL SEKEKDDVRK ILSSKHLFYE 240 EMCSYHNSNR LHLPHDPALQ RSLQQALRSR DDHENNDVRR NNPDDFDEDD QDVDNDDHDE 300 HEENYAPHGD GRTMCGVLKG SAKRMKQAQG HEDFSFGSSL NVQEFNKSSH SHSHMVHPDM 360 NQTFSENRAW SQKQSNESRS LQLEEQKLQI QYEMLELEKQ RFKWERFCKK RDRELEKMKM 420 ENEKMKLENE RMALELRQKE MGVDFS*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNMSQGGM IPGNPAYGGL DLQRSMQIHG QAQQSHTLHQ PHHSHPRQTP GVHPSIHEGF  60
PLTMGALPGC DQMISVGDFN KGERCKNSAS DDDDPSFTED GIDNHNDVSK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED SGSDCGGGGR RKFAVLQKKG KWKSISKVLA ERGYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDMIEFL SEKEKDDVRK ILSSKHLFYE  240
EMCSYHNSNR LHLPHDPALQ RSLQQALRSR DDHENNDVRR NNPDDFDEDD QDVDNDDHDE  300
HEENYAPHGD GRTMCGVLKG SAKRMKQAQG HEDFSFGSSL NVQEFNKSSH SHSHMVHPDM  360
NQTFSENRAW SQKQSNESRS LQLEEQKLQI QYEMLELEKQ RFKWERFCKK RDRELEKMKM  420
ENEKMKLENE RMALELRQKE MGVDFS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F04240.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063872.1	0.0	PREDICTED: uncharacterized protein LOC104450863
TrEMBL	A0A059BYD0	0.0	A0A059BYD0_EUCGR; Uncharacterized protein
STRING	XP_010063872.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-156	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Eucgr.F04240.1.p
Entrez Gene	104450863