PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04239.1.p
Common NameEUGRSUZ_F04239
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 571aa    MW: 64195.2 Da    PI: 5.862
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04239.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.83.8e-201691787
          trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                      m+ ++r++++k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++++++   +++fdqlea
  Eucgr.F04239.1.p  1 MDVTFRDSSAKGPLWEEVSRKLSELGYHRSAKKCKEKFENVFKYHKRTKDGRTGKHEGK--AYRFFDQLEA 69
                      67789************************************************976555..5*******85 PP
2trihelix102.14.4e-32357441186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+k ev aLi++r++++ +++++  k+plWe++s +mr+ g+ers+k+Ckekwen+nk++kk+ke++kkr  e+s+tcpyf+ql+
  Eucgr.F04239.1.p 357 RWPKVEVEALIRLRTNLDGKYQENGPKGPLWEDISVAMRRLGYERSSKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFQQLD 441
                       8*********************************************************************8.78999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.52E-15149No hitNo description
PfamPF138372.3E-13569No hitNo description
PROSITE profilePS500905.1691542IPR017877Myb-like domain
PROSITE profilePS500906.992356414IPR017877Myb-like domain
PfamPF138379.7E-22356443No hitNo description
CDDcd122031.16E-25356421No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDVTFRDSSA KGPLWEEVSR KLSELGYHRS AKKCKEKFEN VFKYHKRTKD GRTGKHEGKA  60
YRFFDQLEAF ENHTLHSSQP PPRPPAPAAQ PPAMQAVIGP HSIPNVPTAA VPLSTTHMSN  120
HHNNNINIIP QNNLATSSTV LNFTMPSFPP PSNPTVVIPP PPPNSGFPRG ARPGEPTSNS  180
TSSSTFSDEG VPRGKRPNKR KRRWRDFFER VIKDVMDKQE DLHRSFLEMI DKCERERAAR  240
EESWWMQETA RLAREREILA QERLAAEAKD TAVMSFLQKI AEQQSRRSSP AQNNNPLSQQ  300
LVAVPTPATP KPSTVPPPAA AAAAALPSQM RSIEVPKADN GVHFATPRGG GAASSSRWPK  360
VEVEALIRLR TNLDGKYQEN GPKGPLWEDI SVAMRRLGYE RSSKRCKEKW ENINKYFKKV  420
KESNKKRRED SKTCPYFQQL DELYREKSSK SGDLGSSTLF TCTTQFSPMI STAAPLMVAP  480
EQQWPPPQQL QQQQQQQQQQ QQQQEMDEME GNHIGENQED DDDDDDDDDD DDDPSNIDRE  540
EEEGEDDDGD DDGREFEIVA SKPSSMGAAE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04239.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063871.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A059BYW10.0A0A059BYW1_EUCGR; Uncharacterized protein
STRINGXP_010063871.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-78Trihelix family protein