PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 499aa MW: 54973.2 Da PI: 5.8192

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F04055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	264	318	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLH rFv+av++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Eucgr.F04055.1.p 264 KPRMRWTPELHVRFVDAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 318 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.275	261	321	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-31	262	319	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-17	263	318	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	264	319	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-8	266	317	IPR001005	SANT/Myb domain
Pfam	PF14379	7.8E-23	355	401	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MNGHSITLPQ SGSTKGMKNS HYTGMSLDHR FLNAESEGIS KASGWSSSSP SPLIRVEPLN 60 LNLSRESTFP SHKTCSESSP SSPLSLASHV QTPKSTYSRS SVFCTSLYQS SSSTSEAHKH 120 LRSLPFLPHP PAYNQSVSAI DSKSSSLFSE DISNLDDEKH TESLMTDFLG FPGDTSDGSF 180 NGIDCASDDL MLTDQLELQY LSDELDLAIT DNADTPNLDD IYEAHLPPSK QETELVCQQK 240 CHSPLPAIDS VSSQPSSGPA AAHKPRMRWT PELHVRFVDA VNKLDGAEKA TPKGVLKLMN 300 VEGLTIYHVK SHLQKYRLAK YMPEKKEEKK GGSSEEKKAM SYGNESDGRR KGSTQITEAL 360 RMQMEVQKQL HEQLEVQREL QLRIEEHARY LQKILEEQQK AGVVLTCPQK MSSSEDACPE 420 SELRPSSPTV AASLPWPAES KYNPRVLSLK NKASESSGTE SHECQQKRIR IEEKAESTSV 480 SDEAVVDTQS EVTQVQSC*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MNGHSITLPQ SGSTKGMKNS HYTGMSLDHR FLNAESEGIS KASGWSSSSP SPLIRVEPLN  60
LNLSRESTFP SHKTCSESSP SSPLSLASHV QTPKSTYSRS SVFCTSLYQS SSSTSEAHKH  120
LRSLPFLPHP PAYNQSVSAI DSKSSSLFSE DISNLDDEKH TESLMTDFLG FPGDTSDGSF  180
NGIDCASDDL MLTDQLELQY LSDELDLAIT DNADTPNLDD IYEAHLPPSK QETELVCQQK  240
CHSPLPAIDS VSSQPSSGPA AAHKPRMRWT PELHVRFVDA VNKLDGAEKA TPKGVLKLMN  300
VEGLTIYHVK SHLQKYRLAK YMPEKKEEKK GGSSEEKKAM SYGNESDGRR KGSTQITEAL  360
RMQMEVQKQL HEQLEVQREL QLRIEEHARY LQKILEEQQK AGVVLTCPQK MSSSEDACPE  420
SELRPSSPTV AASLPWPAES KYNPRVLSLK NKASESSGTE SHECQQKRIR IEEKAESTSV  480
SDEAVVDTQS EVTQVQSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F04055.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063696.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-128	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A059BXL9	0.0	A0A059BXL9_EUCGR; Uncharacterized protein
STRING	XP_010063696.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-116	G2-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F04055.1.p
Entrez Gene	104450718

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]