PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03645.1.p
Common NameEUGRSUZ_F03645
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 438aa    MW: 48166 Da    PI: 8.0295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03645.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.7e-06121142223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C +CgksF++  +L  H+r+H
  Eucgr.F03645.1.p 121 TCVICGKSFPSIKSLYGHMRSH 142
                       7********************9 PP
2zf-C2H214.69.8e-05342364123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+ksFs++  L  H ++H
  Eucgr.F03645.1.p 342 FKCSICNKSFSSHQALGGHKSSH 364
                       89**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0165784IPR007087Zinc finger, C2H2
SMARTSM003551.35779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
PfamPF139122.2E-45979IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993120147IPR007087Zinc finger, C2H2
SMARTSM003550.0049120142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.67E-9121142No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
PfamPF139121.7E-7122144IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-9337364No hitNo description
PfamPF139121.2E-10341366IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.094342369IPR007087Zinc finger, C2H2
SMARTSM003550.0068342364IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEEDLHRETK LMASSGVLYI KLNIQKAQCS SEKDGGSSYE EEDDRVEYPA ASESTSPVCM  60
FCRKGFSSGK ALGGHMRIHA QSTKEPLRKK IHGRKIKRSG TKNNSRRSSA TMAGGQDDHQ  120
TCVICGKSFP SIKSLYGHMR SHPEREWRGI QPPSAAAAKQ SSPSTVSDSV VVRKADDDQI  180
GSDDDAKERS SGAVDLSKSV PGWGVQEALV MLADGNPPSK VSPLIRPRID ATTDDKDEHK  240
MEENCKANCC IDSYSGIEAR NCSAIAENKE VEAFSETELK PKKPVNMMMN RVKEERVQRS  300
YYKLGSELKK SRRIKRFRDL EELHADYDVQ NRIVDPATPG RFKCSICNKS FSSHQALGGH  360
KSSHSKPTKN SQTIRRDRET VLDADLSTPL SQVANSPSAI GEMSSKVLDF DLNELPPMED  420
DKERVVGLGA DSGHCSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03645.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063207.10.0PREDICTED: uncharacterized protein LOC104450381
TrEMBLA0A059BWR30.0A0A059BWR3_EUCGR; Uncharacterized protein
STRINGXP_010063207.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-15C2H2 family protein