PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F03610.1.p

Common Name

EUGRSUZ_F03610

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 745aa MW: 83831.2 Da PI: 8.1659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F03610.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.8	5.1e-30	76	164	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+s ++s+r+g++++r+ vCs+eg+r+ + ++++r+r++tr+gCka+++vkk+++gkw v+k+++eHnHel+p Eucgr.F03610.1.p 76 FYNSYARRIGFGTRVSVYQRSRRDGSVVCRQVVCSREGFRRGGGEG-KSKKRRRTVTRVGCKAQMTVKKRSSGKWAVSKFVEEHNHELVP 164 ****************************************9999.9999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-26	76	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-15	297	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.608	553	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-9	561	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-8	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MDFEPVSIGN DVVEFEVGDS AGEDGGAGTG LDLGLGGRVE RPPSAGAGDT SGSDGDPGLE 60 PCEGMEFHSE QAARTFYNSY ARRIGFGTRV SVYQRSRRDG SVVCRQVVCS REGFRRGGGE 120 GKSKKRRRTV TRVGCKAQMT VKKRSSGKWA VSKFVEEHNH ELVPPDKVHC LRSHRHVPGP 180 ARSLIDTLQA AGMGPSGVMS VLIKESGGVN NVGFTKIDCQ NYMSSSRQRT LGSGGQLVLD 240 YLKQRQAADP GFFCAVQGDF DNLAGNIFWA DANSRKNYAY FGDTVNFDTS YRMNRYRPVL 300 FGCALLLNES ESSFIWLFQT WLDAMSGSHP VSITIDQDGI IRSAVAQVLP GTRHRFCRWN 360 VFREAQEKLS DVYCSNPNFE TEFQRCVNVP ETIEDFELCW ESLLERCGLR NNEWLQLMYN 420 ARQKWVPVFL RDTFFGEMSM MQGKDSINSY FDGYINASTS FQVLIRQYEN AIACRHEKEI 480 KSDYETLNTA PVLKTPSPME KQAANVYTRK IFKKFQGELV ETLAYPATII KDMESEAVYR 540 VAKFGEDHKA NFVKVDVFRK KACCSCQMFE FSGIMCRHIL AVFRVTNVLT LPPDYILKRW 600 TRNAKSESLL DDYMVGFTSN PQESFTARYE NLRIKAIKYV EDGAESIHSY TVAMDALQIA 660 AEKVAASKKH GFGLKQKTLI HGCQSQSRCT EQDEKIRELT SELANASLQC EEYQRKLLAV 720 LKDVEEQKLK ILVKVQNMRL NLKG*

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MDFEPVSIGN DVVEFEVGDS AGEDGGAGTG LDLGLGGRVE RPPSAGAGDT SGSDGDPGLE  60
PCEGMEFHSE QAARTFYNSY ARRIGFGTRV SVYQRSRRDG SVVCRQVVCS REGFRRGGGE  120
GKSKKRRRTV TRVGCKAQMT VKKRSSGKWA VSKFVEEHNH ELVPPDKVHC LRSHRHVPGP  180
ARSLIDTLQA AGMGPSGVMS VLIKESGGVN NVGFTKIDCQ NYMSSSRQRT LGSGGQLVLD  240
YLKQRQAADP GFFCAVQGDF DNLAGNIFWA DANSRKNYAY FGDTVNFDTS YRMNRYRPVL  300
FGCALLLNES ESSFIWLFQT WLDAMSGSHP VSITIDQDGI IRSAVAQVLP GTRHRFCRWN  360
VFREAQEKLS DVYCSNPNFE TEFQRCVNVP ETIEDFELCW ESLLERCGLR NNEWLQLMYN  420
ARQKWVPVFL RDTFFGEMSM MQGKDSINSY FDGYINASTS FQVLIRQYEN AIACRHEKEI  480
KSDYETLNTA PVLKTPSPME KQAANVYTRK IFKKFQGELV ETLAYPATII KDMESEAVYR  540
VAKFGEDHKA NFVKVDVFRK KACCSCQMFE FSGIMCRHIL AVFRVTNVLT LPPDYILKRW  600
TRNAKSESLL DDYMVGFTSN PQESFTARYE NLRIKAIKYV EDGAESIHSY TVAMDALQIA  660
AEKVAASKKH GFGLKQKTLI HGCQSQSRCT EQDEKIRELT SELANASLQC EEYQRKLLAV  720
LKDVEEQKLK ILVKVQNMRL NLKG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F03610.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063175.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059BWK5	0.0	A0A059BWK5_EUCGR; Uncharacterized protein
STRING	XP_010063175.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Eucgr.F03610.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]