PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03523.1.p
Common NameEUGRSUZ_F03523, LOC104450288
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 516aa    MW: 57445.5 Da    PI: 5.3572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03523.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.6e-1291465152374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       +e L +cA+av+++d+ +++ l+++l+ ++s +gdp+qRl ay++e+L arla s+s++ykal+++e +    +e l++++++++++P++kf+
  Eucgr.F03523.1.p 146 KEILCACAKAVEDNDTLKIECLISELRPMVSVSGDPIQRLSAYMLEGLIARLACSGSSIYKALKCKEPA---GAELLSYMHILYDICPYFKFG 235
                       789*****************************************************************9...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       ++ aN  I + ++ e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp +RiTg+++++s   +   le +g+rL+++Ae+++vpf+f++     
  Eucgr.F03523.1.p 236 YMSANGSIADVMKDENSIHIIDFQIAQGGQWITLIQALAARPGGPPCIRITGIDDSRSAysRGGGLEIVGQRLSRLAEACRVPFQFHA-CGVP 327
                       *******************************************************9888989999***********************.899* PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        +++e+ +L ++ +Ea+aVn+ l lh+++desv+++++rd+++++ kslsPkvv++veqe+++n+ +F+ rfle+l+yy ++f+s+++ lpre
  Eucgr.F03523.1.p 328 ASEVEIGNLPIRADEAIAVNFPLLLHHIPDESVCSQNHRDRLIRMAKSLSPKVVTLVEQESNTNTVPFFPRFLETLNYYLSVFESIDMALPRE 420
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++er++vE+++l+r+ivn++aceg er+erhe l+kWr+r+ +aGF+p+pls+++++++k+ll+ + +  y++ee++g+l+lgW++rpLv+ +
  Eucgr.F03523.1.p 421 HKERVNVEQHCLARDIVNLIACEGMERVERHELLGKWRMRFIMAGFSPYPLSSFVNATIKSLLSSYCD-KYSLEERDGALYLGWMNRPLVASC 512
                       ******************************************************************95.5*********************** PP

              GRAS 372 aWr 374
                       aWr
  Eucgr.F03523.1.p 513 AWR 515
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.845119496IPR005202Transcription factor GRAS
PfamPF035141.9E-126146515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MQASQKPRLW DASDRFYNLP AKELESSHWS SITNFDHLSC SDESSQGNCM VESSSGSAPY  60
HVNDSLSTVR FSPDGSPTAK RASVPDSSAQ DHLNDLELKV RELETVMLGP SSDMPHTVDI  120
NFLVESGQMS QETETLMEII SRRDLKEILC ACAKAVEDND TLKIECLISE LRPMVSVSGD  180
PIQRLSAYML EGLIARLACS GSSIYKALKC KEPAGAELLS YMHILYDICP YFKFGYMSAN  240
GSIADVMKDE NSIHIIDFQI AQGGQWITLI QALAARPGGP PCIRITGIDD SRSAYSRGGG  300
LEIVGQRLSR LAEACRVPFQ FHACGVPASE VEIGNLPIRA DEAIAVNFPL LLHHIPDESV  360
CSQNHRDRLI RMAKSLSPKV VTLVEQESNT NTVPFFPRFL ETLNYYLSVF ESIDMALPRE  420
HKERVNVEQH CLARDIVNLI ACEGMERVER HELLGKWRMR FIMAGFSPYP LSSFVNATIK  480
SLLSSYCDKY SLEERDGALY LGWMNRPLVA SCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-631495158375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03523.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063084.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_010063085.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_010063086.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A059BW960.0A0A059BW96_EUCGR; Uncharacterized protein
STRINGXP_010063084.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]