PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03418.1.p
Common NameEUGRSUZ_F03418, LOC104450201
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 433aa    MW: 46175.7 Da    PI: 9.596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03418.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065199220323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       C++Cg+ F+ ++  + H  + H
  Eucgr.F03418.1.p 199 CHKCGEQFTKWDAAEAHHLSkH 220
                       *****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280199220IPR007087Zinc finger, C2H2
SuperFamilySSF563994.75E-21222431No hitNo description
Gene3DG3DSA:3.90.228.101.3E-8225407IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MPTVWFALKK SLHCKSEPSD VHDPKTRKQL TTILTKKTGR SGCSRSIANL KDVIHGSKRH  60
MAEKPPSCSP RSIGSSEFLN PLTHEVILSN TKCELKITGY GNGFQDSGAG GGVGGEGGGG  120
GGSTFVGTLT PGTPMHYFNP SFRTTSANGA TPRKGGSVSG EREGSGGLGG RVGGGGGGVR  180
SSSRVSLDVD ANGISIINCH KCGEQFTKWD AAEAHHLSKH AVTELVEGDS SRKIVEIICR  240
TGWLKSENQG GNRIERVLKV HNMQKTLARF EEYREAVKIK ASKLPKKHPR CLADGNELLR  300
FYGTTVACPL GLDGSSSLCT SERCCVCRIV RHGFSVKKES KGGIGVFTTS TSGRAFESID  360
AVEDVPTVRK ALIVCRVIAG RVHRPLENIQ EMAGQTGFDS LAGKVGLYSH IEELYLLNPR  420
ALLPCFVVIC KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176GGRVGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03418.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062955.10.0PREDICTED: uncharacterized protein LOC104450201
TrEMBLA0A059BVG60.0A0A059BVG6_EUCGR; Uncharacterized protein
STRINGXP_010062955.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-177C2H2 family protein