PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YA

Protein Properties

Length: 259aa MW: 29573.7 Da PI: 9.4046

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F03169.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.4	4.1e-32	99	155	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakl +e+kl +k rkpylheSRh+hA+rRpRgsgGrF Eucgr.F03169.1.p 99 EEPVYVNAKQYHGILRRRQYRAKLGAENKL-IKDRKPYLHESRHHHAVRRPRGSGGRF 155 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-35	97	158	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.225	98	158	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.4E-27	100	155	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	101	123	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	132	155	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSHLFFNLNA LWFQLCGLSN CGFHIDSDQF FVVFEWNSIK RKMELYLNTI SPTRDKASMC 60 LLCYALINYL PLKCPQISYP QMAGMIPSRL PLPFDTTQEE PVYVNAKQYH GILRRRQYRA 120 KLGAENKLIK DRKPYLHESR HHHAVRRPRG SGGRFLSKDQ KESKFTSLND ESNVKSTARV 180 SSAIDLPNSE VCQLKDHRDT GSTTSCSKTT QTTTSSDAIP VSKFRFFGQP WHVMTTCDPS 240 CDVRYSGDIR HLSLPGER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-23	99	163	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F03169.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062677.1	1e-133	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_018731962.1	1e-133	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X2
TrEMBL	A0A059BV25	0.0	A0A059BV25_EUCGR; Uncharacterized protein
STRING	XP_010062677.1	1e-132	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-41	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Eucgr.F03169.1.p