PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03066.1.p
Common NameEUGRSUZ_F03066, LOC104449909
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92950.3 Da    PI: 6.4641
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-192381357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Eucgr.F03066.1.p 23 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                      5679*****************************************************97 PP
2START1762.3e-551673752205
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++
  Eucgr.F03066.1.p 167 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCAGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIE 258
                       7899******************************************************.8888888888****************9999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+l++p+++g+s + +v+h dl+ ++++++l
  Eucgr.F03066.1.p 259 LLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQPFVRAEMLPSGYLVRPCEGGGSIIRIVDHLDLEPWSVPEVL 351
                       *********************************************99888899**************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXXX CS
             START 182 rslvksglaegaktwvatlqrqce 205
                       r+l++s+++ ++kt++a+l+++++
  Eucgr.F03066.1.p 352 RPLYESSTMLAQKTTMAALRQLRQ 375
                       ********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-19881IPR009057Homeodomain-like
PROSITE profilePS5007115.6771882IPR001356Homeobox domain
SMARTSM003891.3E-152086IPR001356Homeobox domain
SuperFamilySSF466894.15E-172186IPR009057Homeodomain-like
CDDcd000861.27E-162383No hitNo description
PfamPF000461.6E-162481IPR001356Homeobox domain
CDDcd146861.45E-675114No hitNo description
PROSITE profilePS5084825.339157372IPR002913START domain
CDDcd088751.32E-76161377No hitNo description
SMARTSM002341.8E-41166376IPR002913START domain
SuperFamilySSF559611.51E-36166378No hitNo description
Gene3DG3DSA:3.30.530.201.2E-22166373IPR023393START-like domain
PfamPF018526.3E-53167375IPR002913START domain
PfamPF086702.5E-52701843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MATSCKEGKL GHSNSSNSLD NGKYVRYTPE QVEALERLYH ECPKPSSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQA VNRKLTAMNK LLMEENDRLQ KQVSQLVYEN  120
GYFRQHTQNT TLATKDTSCE SVVTSGQHQL TSQHPPRDAS PAGLLSIAEE TLAEFLSKAT  180
GTAVEWVQMP GMKPGPDSIG IVAISHGCAG VAARACGLVG LEPTRVAEIL KDRPSWFRDC  240
RAVDVLNVLP TANGGTIELL YMQLYAPTTL APARDFWLLR YTSVLEDGSL VVCERSLKNT  300
QNGPSMPPVQ PFVRAEMLPS GYLVRPCEGG GSIIRIVDHL DLEPWSVPEV LRPLYESSTM  360
LAQKTTMAAL RQLRQIAQEV SQPNVSGWGR RPAALRALSQ RLSRGFNEAL NGFTDEGWSI  420
MGNDGIDDVT ILVNSSPDKL MGLNLSFSNG FPAVSNAVLC ARASMLLQNV PPAVLLRFLR  480
EHRSEWADNS IDAYSAAAVK VGSCALPGSR IGSFGGQVIL PLAHTIEHEE FLEVIKLEGM  540
GHSPEDALMP RDIFFLQMCS GVDENAVGTF AELIFAPIDA SFADDAPLLP SGFRIIPLDS  600
VKEASSPNRT LDLASSLEIG PAGNRSFNDI NANSGCTRSV MTIAFEFAFE SHMQEHVASM  660
ARQYVRSIIS SVQRVALALS PSNLGSHAGL RTPLGTPEAQ TLARWICHSY RCYLGVDLLK  720
SSNEGSELIL KNLWHHSDAI MCCSLKALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD  780
HGRKTLCSEF PQIMQQGFAC LQGGICLSSM GRPVSYERAV AWKVMNEEEN AHCICFMFIN  840
WSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03066.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4721620.0KF472162.1 Eucalyptus tereticornis HD-Zip class III transcription factor (HB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062518.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A059BUK20.0A0A059BUK2_EUCGR; Uncharacterized protein
STRINGXP_010062518.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]