PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 616aa MW: 68662.8 Da PI: 7.433

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F03040.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.8e-21	105	160	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Eucgr.F03040.2.p 105 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQLK 160 7999************************************************9877 PP
2	START	222.4	1.4e-69	274	497	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 l ++a++el k+a+a+ep+W +s+ e++n+de++++f+ + +s+ea+r++gvv+ +l++lv++++d++ qW+e+++ ka+ Eucgr.F03040.2.p 274 LVNQAMEELKKMATAGEPLWIRSVetgrEILNYDEYVKEFKVEAPsegrpkRSIEASRETGVVFVDLPRLVQSFMDVN-QWKEMFPcmisKAA 365 56789*********************************55544999**************************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t++v++sg ga+qlm+aelq+l+p+vp R+++f+Ry++ql+a++w++vdvS++ +++ ++s+v+++++pSg++ie+ksngh+kv+w Eucgr.F03040.2.p 366 TVDVVCSGegpnrnGAVQLMFAELQMLTPMVPtREVYFIRYCKQLSAEQWALVDVSIEKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIW 457 **********************************************************98.9*********************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh ++++ ++h ++r +v+sgla+ga++w+ tlq qce+ Eucgr.F03040.2.p 458 VEHLECQKTTVHPMYRTIVNSGLAFGARHWMTTLQVQCER 497 ************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.84E-21	90	163	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-24	91	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.285	102	162	IPR001356	Homeobox domain
SMART	SM00389	5.4E-19	104	166	IPR001356	Homeobox domain
Pfam	PF00046	8.3E-19	105	160	IPR001356	Homeobox domain
CDD	cd00086	9.53E-17	109	160	No hit	No description
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.996	264	500	IPR002913	START domain
SuperFamily	SSF55961	2.2E-33	266	497	No hit	No description
CDD	cd08875	7.39E-112	268	496	No hit	No description
SMART	SM00234	1.7E-70	273	497	IPR002913	START domain
Pfam	PF01852	3.2E-55	274	497	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	7.0E-5	274	492	IPR023393	START-like domain
SuperFamily	SSF55961	8.1E-6	519	602	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MGVVDMSNNN PPTSRTKDFF ASPALSLSLA GIFRDAGAAA AASASMDVEE GDEGSGGGGG 60 RREDTVEISS ENSGPARSRS DDEFDPDGDN DEDGGDGDKS KKKKRKKYHR HTAEQIREME 120 ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQLK AIQERHENSL LKTEMEKLRD 180 ENKAMRDTIQ KSCCPNCGSA TTSRDTALTT QEQQLRIENA RLKAEVEKLR TALGKYTPGT 240 ASPSCSAGND QENRSSLDFY TGIFGLDKSK IMELVNQAME ELKKMATAGE PLWIRSVETG 300 REILNYDEYV KEFKVEAPSE GRPKRSIEAS RETGVVFVDL PRLVQSFMDV NQWKEMFPCM 360 ISKAATVDVV CSGEGPNRNG AVQLMFAELQ MLTPMVPTRE VYFIRYCKQL SAEQWALVDV 420 SIEKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKTTVHP MYRTIVNSGL 480 AFGARHWMTT LQVQCERLVF FMATNVPTKD SNGVATLAGR KSILRLAQRL TQSFCQAIGA 540 SSYHSWTKVP TKTGEDIRVA SRKNLNDPGE PLGVILCAVS SVLLPVSPHV LFDFLRDESR 600 RMGYHGEWKP GTVHC*

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MGVVDMSNNN PPTSRTKDFF ASPALSLSLA GIFRDAGAAA AASASMDVEE GDEGSGGGGG  60
RREDTVEISS ENSGPARSRS DDEFDPDGDN DEDGGDGDKS KKKKRKKYHR HTAEQIREME  120
ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQLK AIQERHENSL LKTEMEKLRD  180
ENKAMRDTIQ KSCCPNCGSA TTSRDTALTT QEQQLRIENA RLKAEVEKLR TALGKYTPGT  240
ASPSCSAGND QENRSSLDFY TGIFGLDKSK IMELVNQAME ELKKMATAGE PLWIRSVETG  300
REILNYDEYV KEFKVEAPSE GRPKRSIEAS RETGVVFVDL PRLVQSFMDV NQWKEMFPCM  360
ISKAATVDVV CSGEGPNRNG AVQLMFAELQ MLTPMVPTRE VYFIRYCKQL SAEQWALVDV  420
SIEKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKTTVHP MYRTIVNSGL  480
AFGARHWMTT LQVQCERLVF FMATNVPTKD SNGVATLAGR KSILRLAQRL TQSFCQAIGA  540
SSYHSWTKVP TKTGEDIRVA SRKNLNDPGE PLGVILCAVS SVLLPVSPHV LFDFLRDESR  600
RMGYHGEWKP GTVHC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	105	KKKKRK
2	100	106	KKKKRKK
3	102	106	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F03040.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062490.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A059BTM8	0.0	A0A059BTM8_EUCGR; Uncharacterized protein
STRING	XP_010062490.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F03040.2.p

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]