![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.F02906.1.p | ||||||||
Common Name | EUGRSUZ_F02906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 647aa MW: 71377.7 Da PI: 10.4063 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 268 | 312 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Eucgr.F02906.1.p 268 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 312 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-16 | 262 | 316 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.476 | 263 | 317 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.3E-17 | 266 | 315 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-13 | 267 | 315 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 268 | 311 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 268 | 310 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.54E-10 | 270 | 313 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 647 aa Download sequence Send to blast |
MEKKAEGGER DARERHVGGA LRDVSHKIPS CVLEHITTDT LLFSLSLHRS PKSNPVRSRK 60 EQIFNSTFFS SLPFSLSLSV SGLELPDRPP SLLFFRVLKD FRARCSPPWS NRRFLQFASR 120 TKAWIESLHF EVGGFLFLSF GARELSRRRA RTDGTTATAA VRRDPDRSVF ERSRSIRGQR 180 RKPGRETFVL TLFGVGKTRS RAVCVGADMT VQDQDGSAHS SNMIVGSNEM SLSDSLHSIT 240 SISLKEQFSC ANDYAPKVRK PYTITKQRER WTEEEHKKFL EALKLYGRAW RRIEEHVGTK 300 TAVQIRSHAQ KFFSKVVKDP TDGKVETIEI PPPRPKRKPM HPYPRKLLAH PINKESLPQE 360 QPIRSGSPNF SVSELENQSP MSVLSTLGSD GLGSSGASTP SGSSSPSSSG GAACRAGLSL 420 FESPAEENGP ITSEKLELHA RGCEASGGAM EEAPSRTLKL FGMTVSVTDS HWQSSSAIKS 480 ESKEMKLQDP LSQDTLSATS PAKTNRVLNL VQPRDTSTDR MEAGPAPSAP WLNLYGNLTI 540 SLSPIRNKVA PRSTCGDINK NGIPESRNGV TSNEFHSGFD LKLSFLSKPS STSVAPELMT 600 RQERRGRGFM PYKRCMAEKE TQPSGATGLE REVQRVRLSL ECASSL* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.F02906.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010062320.1 | 0.0 | PREDICTED: protein REVEILLE 2 | ||||
TrEMBL | A0A059BV06 | 0.0 | A0A059BV06_EUCGR; Uncharacterized protein | ||||
STRING | XP_010062320.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6356 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17300.1 | 9e-40 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.F02906.1.p |