PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 253aa MW: 27926.6 Da PI: 8.4188

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F02206.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	117	171	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q +Lee F+ + +++++++ +LA++l+L rqV vWFqNrRa+ k Eucgr.F02206.1.p 117 RKKLRLSKAQSSILEESFKAHTTLNTKQKHDLANRLNLRPRQVEVWFQNRRARTK 171 788899***********************************************98 PP
2	HD-ZIP_I/II	118.9	2.7e-38	117	205	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk q+++LEesF+++++L++++K++la++L+l+prqv+vWFqnrRARtk+kq+E+++e+Lk+++++lkeen+rL+ke +eL+ + Eucgr.F02206.1.p 117 RKKLRLSKAQSSILEESFKAHTTLNTKQKHDLANRLNLRPRQVEVWFQNRRARTKLKQTEVECEMLKKCCETLKEENRRLKKELQELK-S 205 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.568	113	173	IPR001356	Homeobox domain
SMART	SM00389	2.2E-14	115	177	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	115	174	IPR009057	Homeodomain-like
CDD	cd00086	9.53E-15	116	174	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.4E-17	116	178	IPR009057	Homeodomain-like
Pfam	PF00046	5.9E-16	117	171	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-17	173	216	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.4E-10	173	207	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MCPIDSGRSF DTSLSLGLGC YGDPEDHEIK IKKPLAKLSG NSTCLTIGLP GGEACGLGSA 60 SGDEVRNIPS RSASSFSNSS SAKREKAEQG EEEAVERGTG SPRATINIED EDEFSPRKKL 120 RLSKAQSSIL EESFKAHTTL NTKQKHDLAN RLNLRPRQVE VWFQNRRART KLKQTEVECE 180 MLKKCCETLK EENRRLKKEL QELKSLKPTA SVYRQIPAAA LPLCPSCERI AHPEFPFSTE 240 SRLWPAHPSA AC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	173	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F02206.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB458829	0.0	AB458829.1 Eucalyptus camaldulensis EcHB1 mRNA for HD-Zip class II transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061603.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22
Swissprot	P46604	3e-59	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A059BRL6	0.0	A0A059BRL6_EUCGR; Uncharacterized protein
STRING	XP_010061603.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-43	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F02206.1.p
Entrez Gene	104449225

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]