PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F02051.1.p

Common Name

EUGRSUZ_F02051

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YB

Protein Properties

Length: 309aa MW: 32850.7 Da PI: 7.694

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F02051.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.5	1.7e-57	138	233	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+++rele Eucgr.F02051.1.p 138 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRELE 230 89******************************************************************************************* PP NF-YB 95 gek 97 gek Eucgr.F02051.1.p 231 GEK 233 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-53	137	248	IPR009072	Histone-fold
SuperFamily	SSF47113	1.41E-39	140	243	IPR009072	Histone-fold
Pfam	PF00808	1.5E-27	143	207	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.8E-20	171	189	No hit	No description
PROSITE pattern	PS00685	0	174	190	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.8E-20	190	208	No hit	No description
PRINTS	PR00615	1.8E-20	209	227	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
RIISPAFVSD GDVDQPRVPS CAPSARRDRV YFESCEGVRR LTIDEEECCS SIAAQAVIRI 60 PQTEFHHRRL DCSCKRYLCQ SVGRFGRWLF GGRRTAVSGG ARAVIGTGVM VDSDNESPPG 120 GGHGSGGNGG GGELWSPREQ DRFLPIANVS RIMKKALPAN AKISKDAKET VQECVSEFIS 180 FVTGEASDKC QREKRKTING DDLLWAMTTL GFEEYVEPLK VYLQRFRELE GEKTAGVREK 240 DGGAYDSESS GGGGGGGGGA YGMMPVGQGQ HQGHVYGYGG FHQIGERGGG VGGGLSGVGP 300 GSILNRPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	4e-46	136	228	1	93	NF-YB
4awl_B	4e-46	136	228	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	4e-46	136	228	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
5g49_A	5e-46	132	228	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F02051.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787663	1e-106	KC787663.1 Brassica napus transcription factor subunit NF-YB3B (NF-YB3B) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061460.1	1e-140	PREDICTED: nuclear transcription factor Y subunit B-3
TrEMBL	A0A059BQL1	0.0	A0A059BQL1_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010061460.1	1e-140	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-66	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Eucgr.F02051.1.p