PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01978.1.p
Common NameEUGRSUZ_F01978, LOC104449061
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 484aa    MW: 53792.8 Da    PI: 6.9696
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01978.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.82.2e-121804832374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal.......... 81 
                       ++lL++cAe +s ++++ a++l++ ls ++sp+gd+++Rl++ f +AL+ rl+r  s +++a pp+++s       s++              
  Eucgr.F01978.1.p  80 RQLLVTCAELLSLSNFAPAHRLISILSANSSPYGDSTERLVHQFSRALSIRLHR--SAVAAAAPPNRSSL-LfphRSNS---Stvfgfgvdsa 166
                       799***************************************************..55665555555542.22322222...13457889999 PP

              GRAS  82 ................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg........ppslRiTgvgsp 150
                                        ++++v+P+++fshltaNqaIlea++g+++vHi+D+di++G+QWp+L+qa+ +R++         pp+lRiTg g+ 
  Eucgr.F01978.1.p 167 vrpgqgsdpsalqscyLTLNQVTPFIRFSHLTANQAILEAIDGQRAVHIVDLDIMHGVQWPPLMQAIVERSSTndknalllPPTLRITGAGH- 258
                       9********999887556*****************************************************5556789999***********. PP

              GRAS 151 esgskeeleetgerLakfAeelgvpfefnvl......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                          + e+l++tg+rL+ fA++lg++f+f +l      ++ +l++  ++e+++ p+EalaVn+vl lhrll++++   s    +L+ +k l+P+
  Eucgr.F01978.1.p 259 ---DLEALHRTGDRLSTFAQSLGLEFQFCPLllphdaLSVALHAAIPSEISTLPDEALAVNCVLCLHRLLKDDARELS---IFLRKIKALRPR 345
                       ...****************************999886666899999************************88887777...9*********** PP

              GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                       vv+v+e+ea+hn++ Fl+rf+eal++y+a+fdslea+lp+ s+er  +E++++grei +++  eg+ r erhe++e+W+  l+++GF +vpls
  Eucgr.F01978.1.p 346 VVTVAEREASHNHPMFLQRFVEALDHYTAVFDSLEATLPPSSRERLALEQAWFGREIADIIGEEGEGRLERHERFESWEVLLRSSGFVNVPLS 438
                       ********************************************************************************************* PP

              GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +a +qaklllr ++ s+gy+++ ++ s++lgW++r+L++vS+Wr
  Eucgr.F01978.1.p 439 PFALSQAKLLLRLHYpSEGYQLQVKNSSVFLGWQSRALFTVSSWR 483
                       ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.12853462IPR005202Transcription factor GRAS
PfamPF035147.7E-11980483IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLGSFSSNNS HEEEEQEHHH HHHQHHHHSD SPSDLQHHQF HYHHLIPHHH APPALPSPPP  60
FPTPPSTLSS PASPSVINTR QLLVTCAELL SLSNFAPAHR LISILSANSS PYGDSTERLV  120
HQFSRALSIR LHRSAVAAAA PPNRSSLLFP HRSNSSTVFG FGVDSAVRPG QGSDPSALQS  180
CYLTLNQVTP FIRFSHLTAN QAILEAIDGQ RAVHIVDLDI MHGVQWPPLM QAIVERSSTN  240
DKNALLLPPT LRITGAGHDL EALHRTGDRL STFAQSLGLE FQFCPLLLPH DALSVALHAA  300
IPSEISTLPD EALAVNCVLC LHRLLKDDAR ELSIFLRKIK ALRPRVVTVA EREASHNHPM  360
FLQRFVEALD HYTAVFDSLE ATLPPSSRER LALEQAWFGR EIADIIGEEG EGRLERHERF  420
ESWEVLLRSS GFVNVPLSPF ALSQAKLLLR LHYPSEGYQL QVKNSSVFLG WQSRALFTVS  480
SWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-688648225377Protein SCARECROW
5b3h_D2e-688648225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01978.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061376.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-133SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A059BRM70.0A0A059BRM7_EUCGR; Uncharacterized protein
STRINGXP_010061376.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-122GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]