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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F01910.1.p | ||||||||
Common Name | EUGRSUZ_F01910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 26193.7 Da PI: 9.8002 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.4e-06 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Eucgr.F01910.1.p 52 FVCEICNKGFQRDQNLQLHRRGH 74 89*******************88 PP | |||||||
2 | zf-C2H2 | 17.9 | 8.5e-06 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H+rt+ Eucgr.F01910.1.p 130 WKCERCSKKYAVQSDWKAHMRTC 152 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 51 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.51E-8 | 51 | 74 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 52 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 3.1E-5 | 52 | 74 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 85 | 95 | 125 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.2E-6 | 118 | 151 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.51E-8 | 125 | 151 | No hit | No description |
SMART | SM00355 | 70 | 130 | 150 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVEMPNPSSQ EVSSSDLSAP PAKKKRSLPG MPDPEAEVIA LSPKTLLATN RFVCEICNKG 60 FQRDQNLQLH RRGHNLPWRL RQRDSNAEPP RKKVYVCPEP GCVHHSPARA LGDLTGIKKH 120 FCRKHGEKKW KCERCSKKYA VQSDWKAHMR TCGTREYKCD CGMLFSRRDS FVTHRAFCDA 180 LAEESSRAQN NNSVQDEQNA RRSGSAAAAA SASSPPPPPL TPSTTVVSPV LSLQSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 126 | 192 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 126 | 192 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F01910.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061336.1 | 1e-176 | PREDICTED: protein indeterminate-domain 1 | ||||
Swissprot | Q9SCQ6 | 1e-108 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A059BQ84 | 1e-175 | A0A059BQ84_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010061336.1 | 1e-175 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-109 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F01910.1.p |
Publications ? help Back to Top | |||
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