PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01868.1.p
Common NameEUGRSUZ_F01868
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 393aa    MW: 42728.8 Da    PI: 7.7564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01868.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.1e-052773171055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Eucgr.F01868.1.p 277 KVRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 317
                       567789999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.728267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.004271322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.01E-6277321No hitNo description
SuperFamilySSF474592.22E-11277330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-9281324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDQLITPILG HPTPASLANS GADPTPKHGI LNPLLQSSSV QIDIGSHLTR NNSSVEPFGN  60
NVDLAYGVKE ELSDSLRFTD LLNSTQSGIE DLHLYHSTSH VKNTDEVRDD LSELSQKLML  120
KTLTSTCQIN LNAYSPGRDF FYPSAQHYVQ PGIFSQIHPS IDVSNFSQSR GSMSSSLDIN  180
SPAFDPLNGR FSGGIANTTQ GTDLGMNRES FAFGLQRMRQ SAQHHDRIPP VFTTKTTEAK  240
RPGSSLEPNK TSGPHHQVAP KKTRVDQSTR AASAPFKVRK EKLGDRIAAL QQLVAPFGKT  300
DTASVLMEAI GYIKFLQNQV QTLSVPYMKA SRKEANRSRQ RGPIEDEDDE QTTRDLKSRG  360
LCLVPLSCMS YVAAEGGSGG GIWPSPAAQL PQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01868.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061277.10.0PREDICTED: transcription factor bHLH110
TrEMBLA0A059BPT20.0A0A059BPT2_EUCGR; Uncharacterized protein
STRINGXP_010061277.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.16e-60bHLH family protein