 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Eucgr.F01614.1.p |
| Common Name | EUGRSUZ_F01614 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
SRS |
| Protein Properties |
Length: 241aa MW: 25564.6 Da PI: 7.7967 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Eucgr.F01614.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 215 | 1.8e-66 | 13 | 169 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrel.....kskkqsal 86
g+++CqdCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaakrrerqq+la+a+ + +++ + ++++ +l +++ + +
Eucgr.F01614.1.p 13 GGGINCQDCGNQAKKDCVHLRCRTCCKSRGFECPTHVKSTWVPAAKRRERQQHLATAAVMHHHQQqqplR---QEQPFQLdhyfkRQRDGEVA 102
5789*************************************************99987766555522331...22222223333233333344 PP
DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++ + a+s e+ + lP+e++s+avfrc+rvs++dd +ee+aYqtav+igGhvf+GiLydqG+e+
Eucgr.F01614.1.p 103 AAPPFPIATSGLEVG-QALPPEINSSAVFRCLRVSAMDDTDEEFAYQTAVNIGGHVFRGILYDQGPES 169
444555665554444.44************************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MMMRHGGEGG GGGGGINCQD CGNQAKKDCV HLRCRTCCKS RGFECPTHVK STWVPAAKRR 60
ERQQHLATAA VMHHHQQQQP LRQEQPFQLD HYFKRQRDGE VAAAPPFPIA TSGLEVGQAL 120
PPEINSSAVF RCLRVSAMDD TDEEFAYQTA VNIGGHVFRG ILYDQGPESR FSSAGESSSG 180
GGGGSHQPLN LITAAPGSTS AAATTAAATG NLATTLLDPS IYATPLNAFM AGTQFFPPPR 240
*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G66350.1 | 1e-62 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
|
