PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01576.1.p
Common NameEUGRSUZ_F01576, LOC104448763
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 102aa    MW: 11412.9 Da    PI: 10.0994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01576.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-081257345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      +WT+   + + +a +++ ++   +W+ +ar +g +++++++k r+ 
  Eucgr.F01576.1.p 12 SWTPMQNKMFERALALYDKDtpdRWHNVARAVGGNKSAEEVKRRYD 57
                      7*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.342560IPR017877Myb-like domain
SMARTSM007176.2E-8962IPR001005SANT/Myb domain
SuperFamilySSF466895.07E-121168IPR009057Homeodomain-like
PfamPF002493.2E-61258IPR001005SANT/Myb domain
CDDcd001673.10E-61360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASSSLSHSS SSWTPMQNKM FERALALYDK DTPDRWHNVA RAVGGNKSAE EVKRRYDMLV  60
QDVMSIESGQ VPLPKYRASS ASYGTSRAMA DEQRMLRNLK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-294101292RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01576.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060956.19e-70PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A059BQ462e-68A0A059BQ46_EUCGR; Uncharacterized protein
STRINGXP_010060956.13e-69(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-37RAD-like 6