 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Eucgr.F01204.1.p |
| Common Name | EUGRSUZ_F01204, LOC104448513 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
TCP |
| Protein Properties |
Length: 415aa MW: 44803.3 Da PI: 7.1915 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Eucgr.F01204.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 122.1 | 6.3e-38 | 41 | 164 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88
+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ +++++ a++++ +a ++++
Eucgr.F01204.1.p 41 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELPAWKPTATAAATRHPQATDERESpvdihq 133
79**************************************************************54444334222222222222222344445 PP
TCP 89 ...kaaksaa.kskksqksaasalnlakesr 115
+aa+++ + +++q++++++ n +++s+
Eucgr.F01204.1.p 134 aavDAAADDIrNLQQQQQQQQQQINSHHQSN 164
5566666666577777777777778877776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MGDNHHPQQA AATSSRLGMR RGGGGAGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR 60
VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKTAIDE LAELPAWKPT ATAAATRHPQ 120
ATDERESPVD IHQAAVDAAA DDIRNLQQQQ QQQQQQINSH HQSNPNTTSF LPPSLDSDSI 180
ADTIKSFFPM GVNPADAPPP PPSSVQFQSY HHHHQHPPDL LSRTSSQSQD LRLSLQSFQD 240
PVLLRPQSHD HHVVFSGTPQ LGFDSSPAAS LWPSEHTHHN TNPASDIGRY HRIAPWSVGG 300
SNGGGGGGGF MFSPPPPEAA TAAAQPLFGQ GQLFTQRGPL QSSNLPVIRA WIDPTLSSSD 360
HHHQMQHSIH PISPAGFASG VFPGYHIPAR IQGQDGEHDG ILDKPSSASS DSHH*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
| Publications
? help Back to Top |
- Schommer C, et al.
Control of jasmonate biosynthesis and senescence by miR319 targets.
PLoS Biol., 2008. 6(9): p. e230
[PMID:18816164] - Ju Y, et al.
Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments.
Plant Cell, 2016. 28(9): p. 2131-2146
[PMID:27468890] - Challa KR,Aggarwal P,Nath U
Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis.
Plant Cell, 2016. 28(9): p. 2117-2130
[PMID:27597774] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Li J, et al.
RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
J. Exp. Bot., 2016. 67(22): p. 6473-6480
[PMID:27838638] - Sun X, et al.
Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor.
Plant Biotechnol. J., 2017. 15(10): p. 1284-1294
[PMID:28233945] - Kubota A, et al.
TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.
PLoS Genet., 2017. 13(6): p. e1006856
[PMID:28628608] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Vadde BVL,Challa KR,Nath U
The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana.
Plant J., 2018. 93(2): p. 259-269
[PMID:29165850] - Challa KR,Rath M,Nath U
The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways.
PLoS Genet., 2019. 15(2): p. e1007988
[PMID:30742619]
|
