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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F00403.1.p | ||||||||
Common Name | EUGRSUZ_F00403, LOC104448012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 331aa MW: 35571.4 Da PI: 7.568 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.4 | 6.4e-32 | 126 | 180 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY+eClkNhA+ +Gg avDGCgEfm++ geegt +alkCaAC+CHRnFHR+e++ Eucgr.F00403.1.p 126 SVRYRECLKNHAVGIGGSAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETD 180 79**************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.9E-29 | 127 | 179 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.6E-29 | 128 | 178 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-23 | 128 | 181 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.874 | 129 | 178 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.46E-21 | 253 | 328 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-32 | 254 | 329 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-27 | 267 | 323 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MMATLSIPSY LLFSSVLGGS LHSSEKTHVK ISATATPAAA TISSWREKGN WRREGERERG 60 REEREDMEFD EHDDQDEEME IPVHHHQAAP APVGYDSLGN PGRPSGSGAV GEGGASAAPR 120 KSASASVRYR ECLKNHAVGI GGSAVDGCGE FMAAGEEGTL DALKCAACNC HRNFHRKETD 180 AGDGGGGLVS YHHPHHHPGQ QHPQFSPYYR AAPSPAGYLH LTPPQQQHRP LALPAASGGG 240 HSREELEDMS NPSSSGGGGG GGGSGLKKRF RTKFTPEQKE KMLGFAERLG WRIQKHDETA 300 VEQFCAETGV KRHVLKVWMH NNKHTLGKKP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-29 | 268 | 325 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F00403.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060081.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 isoform X1 | ||||
Swissprot | Q6YXH5 | 2e-77 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A059BKP6 | 0.0 | A0A059BKP6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060080.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-70 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F00403.1.p |
Entrez Gene | 104448012 |
Publications ? help Back to Top | |||
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